SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151278

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene151278
GATGAAGTCAAGGTTGTTCGTGGATTCAACAAGGGTCGTGAAGGAAAGATTATCGCTTGCTACCGTCTTAAGTGGGTGATTCACATTGAGAAGCTTACTCGCGAGAAGGCCAATGGTGCCACTGTGAACATTGGTATCCACCCAAGCAAAGTAGTCATCACAAAGTTGAAACTGGATAAGGATCGTCGTGCTATCCTCGACCGAAAGGACGGATCGAAGAACGCTGCTGGAGGAAA

Ace file of the UniGene sp_v3.0_unigene151278

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os11g0151300 protein (Fragment) n=1 Tax=Oryza sativa Japonica Group RepID=Q0IUK5_ORYSJ	-	-	6.0e-25	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	60S ribosomal protein L26	-	-	4.555e-11	-

Source	Gene names
Sma3	At3g49910; At5g67510; CHLREDRAFT_136811; F3A4.4; GSVIVT00019661001; GSVIVT00038278001; K9I9.7; LOC_Os11g05370; LOC_Os12g05430; MICPUCDRAFT_30848; MICPUN_91267; OSTLU_8655; Os11g0151300; Os12g0150100; OsI_00322; OsI_00325; OsI_35131; OsI_37478; OsJ_00311;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49910.1	Translation protein SH3-like family protein chr3:18504311-18504751 FORWARD LENGTH=146	6.0e-32	67%
RefSeq	Arabidopsis thaliana	NP_190560.1	60S ribosomal protein L26-1 [Arabidopsis thaliana]	8.0e-32	67%
RefSeq	Populus trichocarpa	XP_002310593.1	predicted protein [Populus trichocarpa]	3.0e-32	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXB2

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 78 - 147

Fln protein: DEVKVVRGFNKGREGKIIACYRLKWVIHIEKLTREKANGATVNIGIHPSKVVITKLKLDKDRRAILDRKDGSKNAAGG

Protein Length: 79

Fln nts: GATGAAGTCAAGGTTGTTCGTGGATTCAACAAGGGTCGTGAAGGAAAGATTATCGCTTGCTACCGTCTTAAGTGGGTGATTCACATTGAGAAGCTTACTCGCGAGAAGGCCAATGGTGCCACTGTGAACATTGGTATCCACCCAAGCAAAGTAGTCATCACAAAGTTGAAACTGGATAAGGATCGTCGTGCTATCCTCGACCGAAAGGACGGATCGAAGAACGCTGCTGGAGGAAA

Fln Alignment:

HLKU4M004IDJZ0___DEVKVVRGFNKGREGKIIACYRLKWVIHIEKLTREKANGATVNIGIHPSKVVITKLKLDKDRRAILDRKDGSKNAAGG
A9NXB2________________DEVQVVRGSFKGREGKVVQVYRKKWVIHVERITRDKVNGSTVNVGVHPSKVIVTKLKLDKDRKSLLERKGKGRAAEKG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain