SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151193

Length: 370 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene151193
GACGTTCTACAGCGCCAACCCTCGCAGCAACCGTACCACCCAGGGCACCTTCCTGACTGTTGAGCAGCAAGTTGATGGCCTCAATTGGGCTGTTGTTCTGACTGACGGCGACTGGGACACTCAGTACACTTGGAAGCCACACTCGCTCATTTCCACTGCCTCGTTTGCCACCATCAGCTGGAACATTACTGAGACCGCTGAGCCAGGCATCTACCGCATCGGCCACTTTGCCTCGCACAAGGAGATTGACGGTCAGATCGTTCCCTTCTCGGGCTACTCCGGCAGCTTTGTTGTCGAGGCTTGAATCCACTCGTCTTGAATAGAGGCGGCGCAGGTGGAAATCCTACTTAGTAAAGCAAATTCAGTACGG

Ace file of the UniGene sp_v3.0_unigene151193 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Neutral/alkaline nonlysosomal ceramidase n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C3J2_9EUKA	-	-	8.0e-17	48%
FL-Next	sp=Neutral ceramidase; Oryza sativa subsp. japonica (Rice).	-	-	0.0	40%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G58980.1	Neutral/alkaline non-lysosomal ceramidase chr5:23811449-23814395 REVERSE LENGTH=733	2.0e-19	46%
RefSeq	Arabidopsis thaliana	NP_200706.1	Neutral/alkaline non-lysosomal ceramidase [Arabidopsis thaliana]	2.0e-19	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0JL46

Fln msg: your sequence is shorter than subject: 101 - 785

Fln protein: TFYSANPRSNRTTQGTFLTVEQQVDGLNWAVVLTDGDWDTQYTWKPHSLISTASFATISWNITETAEPGIYRIGHFASHKEIDGQIVPFSGYSGSFVVEA*

Protein Length: 102

Fln nts: GACGTTCTACAGCGCCAACCCTCGCAGCAACCGTACCACCCAGGGCACCTTCCTGACTGTTGAGCAGCAAGTTGATGGCCTCAATTGGGCTGTTGTTCTGACTGACGGCGACTGGGACACTCAGTACACTTGGAAGCCACACTCGCTCATTTCCACTGCCTCGTTTGCCACCATCAGCTGGAACATTACTGAGACCGCTGAGCCAGGCATCTACCGCATCGGCCACTTTGCCTCGCACAAGGAGATTGACGGTCAGATCGTTCCCTTCTCGGGCTACTCCGGCAGCTTTGTTGTCGAGGCTTGA___ATCCACTCGTCTTGAATAGAGGCGGCGCAGGTGGAAATCCTACTTAGTAAAGCAAATTCAGTACGG

Fln Alignment:

HLKU4M004I795S___TFYSANPRSNRTTQGTFLTVEQQVDGLNWAVVLTDGDWDTQYTWKPHSLISTASFATISWNITETAEPGIYRIGHFASHKEIDGQIVPFSGYSGSFVV
Q0JL46________________TFYSACPRNDLLTDGTFALVEKLDGNNNWVPVYDDDDWSLRFKWSRPARLSSRSFATLEWTVPEDAAAGVYRLRHFGASKPMFGSVRHFTGTSRAFAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain