SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151166

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene151166
ACGAGAACGTAGCGATTGCGTTCCCGGACGAGGGGCGATCAAACGATTCGGCGGTCAATTCCACGAGTTCGACACCATCCTCTGCTCCAAGGTGAGAGGGGAGGGCAACAAAACGGATCGTCACCGTCAAGGAGGGCGACGCCGCTGGCCGCCACGTGTTCATCATCGACGACCTCGTGCAGACCGGCGGAACGCTCATTGAATGCAAGAACGCACTGATCAAGCAGGGCGCCAAGGACGTGTCGGCCTACGTGACCCACGCCATCTTCCCTGGCGATAGCTGGAAGCGCTTCACTGACCCGACCGACGAGACACCCTTC

Ace file of the UniGene sp_v3.0_unigene151166

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ribose phosphate pyrophosphokinase (ISS) [Ostreococcus tauri] emb\|CAL57521.1\| putative ribose phosphate pyrophosphokinase (ISS) [Ostreococcus tauri]	-	-	2.0e-21	52%
FL-Next	sp=Ribose-phosphate pyrophosphokinase 3, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Sma3	Phosphoribosyl pyrophosphate synthetase 3	-	-	1.035e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribose-phosphate diphosphokinase.	EC:2.7.6.1	-	1.685e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	1.685e-09	%
Sma3	Purine metabolism	00230	1.685e-09	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.685e-09	%
Sma3	Biosynthesis of plant hormones	01070	1.685e-09	%
Sma3	Metabolic pathways	01100	1.685e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	1.685e-09	%

Source	Gene names
Sma3	At1g10700; F20B24.13; MICPUCDRAFT_44911; OSTLU_18322; OSTLU_27455; OSTLU_43177; Ot15g01020; Ot16g01440; PHYPADRAFT_164942; PHYPADRAFT_222025; PRS3; RCOM_0024540; T16B5.16;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	ribose phosphate diphosphokinase activity	GO:0004749	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Phosphoribosyl pyrophosphate synthetase, conserved site	IPR000842	-	-
Sma3	Ribose-phosphate diphosphokinase	IPR005946	-	-
Sma3	Oligosaccharide biosynthesis protein Alg14-like	IPR013969	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10700.1	PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 chr1:3554157-3556274 FORWARD LENGTH=411	2.0e-25	49%
RefSeq	Arabidopsis thaliana	NP_172540.1	ribose-phosphate pyrophosphokinase 3 [Arabidopsis thaliana]	3.0e-25	49%
RefSeq	Populus trichocarpa	XP_002314602.1	predicted protein, partial [Populus trichocarpa]	5.0e-23	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93Z66

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 106 - 411

Fln protein: ENVAIAFPDEGRSNDSAVNSTSSTPSSAPR*EGRATKRIVTVKEGDAAGRHVFIIDDLVQTGGTLIECKNALIKQGAKDVSAYVTHAIFPGDSWKRFTDPTDETPF

Protein Length: 107

Fln nts: ACGAGAACGTAGCGATTGCGTTCCCGGACGAGGGGCGATCAAACGATTCGGCGGTCAATTCCACGAGTTCGACACCATCCTCTGCTCCAAGGTGAGAGGGGAGGGCAACAAAACGGATCGTCACCGTCAAGGAGGGCGACGCCGCTGGCCGCCACGTGTTCATCATCGACGACCTCGTGCAGACCGGCGGAACGCTCATTGAATGCAAGAACGCACTGATCAAGCAGGGCGCCAAGGACGTGTCGGCCTACGTGACCCACGCCATCTTCCCTGGCGATAGCTGGAAGCGCTTCACTGACCCGACCGACGAGACACCCTTC

Fln Alignment:

HLKU4M004ICZBP___ENVAIAFPDEGRSNDXXXXXXXXXXXXXXR*EGRATKRIVTVKEGDAAGRHVFIIDDLVQTGGTLIECKNALIKQGAKDVSAYVTHAIFPGDSWKRFTDPTDETP
Q93Z66________________DNISIAFPDDGAWKRFHKQLQHYPTIVCNKVR-MGDKRIVRIKEGDAEGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPRSSWKRFKLDTKGDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain