SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151094

Length: 269 nt

UniGene Fasta

>sp_v3.0_unigene151094
CATAGATGGTGGGTACAAAAGTCCGCATTATTTCGGATTTCTCGCACGTTTCCGCTATTTTTGCAGCCGATTTTAAATCCCTAATATGGCAGGACAACTTAAGGAGGTACGCAATCGAATCAAATCAATTCAAAACAGCCAGCAGATCACCAAGGCTATGAAGATGGTGAGTGCGGCTAAATTGCGCCGTGCACAAGACGCTATTATTCAGATGCGTCCTTATGCACAAAAGCTCCAGGAGTTGCTGAGCAATATCGTCAGCAGCAGTG

Ace file of the UniGene sp_v3.0_unigene151094

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase gamma chain n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PV56_CHIPD	-	-	8.0e-19	81%
FL-Next	sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G04640.1	ATPC1 ATPase, F1 complex, gamma subunit protein chr4:2350761-2351882 REVERSE LENGTH=373	1.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_567265.1	ATP synthase gamma chain 1 [Arabidopsis thaliana]	1.0e-13	50%
RefSeq	Populus trichocarpa	XP_002317203.1	predicted protein [Populus trichocarpa]	1.0e-13	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1T4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 264 aas, your sequence is shorter than subject: 89 - 380

Fln protein: IDGGYKSPHYFGFLARFRYFCSRF*IPNMAGQLKEVRNRIKSIQNSQQITKAMKMVSAAKLRRAQDAIIQMRPYAQKLQELLSNIVSSS

Protein Length: 90

Fln nts: CATAGATGGTGGGTACAAAAGTCCGCATTATTTCGGATTTCTCGCACGTTTCCGCTATTTTTGCAGCCGATTTTAAATCCCTAATATGGCAGGACAACTTAAGGAGGTACGCAATCGAATCAAATCAATTCAAAACAGCCAGCAGATCACCAAGGCTATGAAGATGGTGAGTGCGGCTAAATTGCGCCGTGCACAAGACGCTATTATTCAGATGCGTCCTTATGCACAAAAGCTCCAGGAGTTGCTGAGCAATATCGTCAGCAGCAGTG

Fln Alignment:

HLKU4M004IBT8J___LKEVRNRIKSIQNSQQITKAMKMVSAAKLRRAQDAIIQMRPYAQKLQELLSNI
A9P1T4________________LRTLRDRIASVTNTKKITDAMKLVAAAKVRRAQEAVVNGRPFSETLVQVLYNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain