SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151071

Length: 441 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene151071
CAGATATGCTCCTCGTCGAAACTATCCTCGCACACAAGACCTGGACTCCACGAGAATGGGACCTTACCTACGTCGACCTACCAAACCGACTTGTTCGAGTAGAGGTTGGCGACAGGAACCTATTCAAGACGACTGATGCGGAGAGAAAGTTGGTCGAGCCGCAAGGAGTTCAGGAGCAAATCGACGCTTTGGTCAAGAAGTACAAGGACGGCAGATCTTTCGCCAGAGCTTCTGGGACCGAGGACGCCGTCAGAGTTTATGCCGAAGCAGCGACTCGGAGCGAAGCGGACGATCTTGCGAGCAAGGTCGCGGGTATTGTTAAGTCGGAGGGTGGAGGCAAGTAATAGACATGATTATTATTGGATGAGAAATGAGACCATGAAAAGCGTTGGTTGGATTTCTGATTATTGGAGAAGACAGAGATAGCATTTATATCCACTC

Ace file of the UniGene sp_v3.0_unigene151071 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	N-acetylglucosamine-phosphate mutase n=2 Tax=Trichocomaceae RepID=B6Q3J4_PENMQ	-	-	3.0e-39	72%
FL-Next	sp=Phosphoacetylglucosamine mutase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Phosphoacetylglucosamine mutase	-	-	3.06e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoacetylglucosamine mutase.	EC:5.4.2.3	-	1.67e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.67e-13	%

Source	Gene names
Sma3	At5g18070; CHLREDRAFT_130104; DRT101; GSVIVT00001611001; GSVIVT00015819001; LOC_Os07g09720; MICPUN_104371; MRG7.2; OJ1715_A07.21; Os07g0195400; OsI_25249; P0589E08.4; PHYPADRAFT_221293; POPTRDRAFT_589964; RCOM_0519550; VITISV_007296;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phosphoacetylglucosamine mutase activity	GO:0004610	Molecular Function	-
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	-
Sma3	photoreactive repair	GO:0000719	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to UV	GO:0009411	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Phosphoacetylglucosamine mutase	IPR016657	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G18070.1	DRT101 phosphoglucosamine mutase-related chr5:5981117-5982787 FORWARD LENGTH=556	1.0e-29	51%
RefSeq	Arabidopsis thaliana	NP_568359.2	phosphoacetylglucosamine mutase [Arabidopsis thaliana]	2.0e-29	51%
RefSeq	Populus trichocarpa	XP_002326704.1	predicted protein [Populus trichocarpa]	9.0e-24	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P57750

Fln msg: your sequence is shorter than subject: 114 - 556

Fln protein: DMLLVETILAHKTWTPREWDLTYVDLPNRLVRVEVGDRNLFKTTDAERKLVEPQGVQEQIDALVKKYKDGRSFARASGTEDAVRVYAEAATRSEADDLASKVAGIVKSEGGGK*

Protein Length: 115

Fln nts: CAGATATGCTCCTCGTCGAAACTATCCTCGCACACAAGACCTGGACTCCACGAGAATGGGACCTTACCTACGTCGACCTACCAAACCGACTTGTTCGAGTAGAGGTTGGCGACAGGAACCTATTCAAGACGACTGATGCGGAGAGAAAGTTGGTCGAGCCGCAAGGAGTTCAGGAGCAAATCGACGCTTTGGTCAAGAAGTACAAGGACGGCAGATCTTTCGCCAGAGCTTCTGGGACCGAGGACGCCGTCAGAGTTTATGCCGAAGCAGCGACTCGGAGCGAAGCGGACGATCTTGCGAGCAAGGTCGCGGGTATTGTTAAGTCGGAGGGTGGAGGCAAGTAA___TAGACATGATTATTATTGGATGAGAAATGAGACCATGAAAAGCGTTGGTTGGATTTCTGATTATTGGAGAAGACAGAGATAGCATTTATATCCACTC

Fln Alignment:

HLKU4M004IJ6UE___MLLVETILAHKTWTPREWDLTYVDLPNRLVRVEVGDRNLFKTTDAERKLVEPQGVQEQIDALVKKYKDGRSFARASGTEDAVRVYAEAATRSEADDLASKVAGIVKS
P57750________________VLLVEVILQHLGWSIEKWNELYKDLPSRQIKVEVPDRTAVVTTSEETEALRPMGIQDAINSEIKKYSRGRAFIRPSGTEDVVRVYAEASTQEDADSLANSVAQLVKS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain