SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene151050

Length: 345 nt

UniGene Fasta

>sp_v3.0_unigene151050
CGAAGAAGTTGGTTAAGAAATTGGCAAAGAAGTACAACGCTTTCCTTGCTTCTGAAAGTGTTATCCGTCAAATTCCTCGTCTTTTGGGTACCTGGTTTGACAAAGGCTGGAAAATTACCCAACTCTCTTGACCCACTCCGAAGATATGGGAGCCAAGATCAACGAATTGAAGTGCACTGTTAGATTCCAATTGAAGAAGGTTCTTTGTATGGCTGTTGCTGTTGGAAACGTTAACATGACCCCTGAAGAATTGACTGCTAACATTCAACTCACCGTTAACTTCTTGATCTCCCTTTTGAAGAAGGGATGGCAAAACGTCAAGACCCTCAACATCAAGAGCACAAT

Ace file of the UniGene sp_v3.0_unigene151050

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S60 ribosomal protein L10a n=1 Tax=Polysphondylium pallidum RepID=D3BAC7_POLPA	-	-	6.0e-30	65%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Ribosomal protein L1	-	-	3.93e-29	-

Source	Gene names
Sma3	At1g08360; At2g27530; At5g22440; CHLREDRAFT_195585; F10A12.22; F15K20.37; GSVIVT00021612001; GSVIVT00021613001; GSVIVT00037355001; MICPUCDRAFT_49658; MICPUN_95416; MWD9.24; OJ1150_A11.31; OSJNBa0073A18.28; OSTLU_45590; Os01g0860300; Os02g0321900; OsI_0451

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Nonaspanin (TM9SF)	IPR004240	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27530.1	PGY1 Ribosomal protein L1p/L10e family chr2:11763443-11764570 REVERSE LENGTH=216	2.0e-29	61%
RefSeq	Arabidopsis thaliana	NP_850104.1	60S ribosomal protein L10a-2 [Arabidopsis thaliana]	3.0e-29	61%
RefSeq	Populus trichocarpa	XP_002310766.1	predicted protein [Populus trichocarpa]	3.0e-30	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV9

Fln msg: Overlapping hits, possible frame ERROR between 125 and 116, STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 114 - 216

Fln protein: KKLVKKLAKKYNAFLASESVIRQIPRLLGTWFDKGWKxxxxxLTHSEDMGAKINELKCTVRFQLKKVLCMAVAVGNVNMTPEELTANIQLTVNFLISLLKKGWQNVKTLNIKST

Protein Length: 115

Fln nts: CGAAGAAGTTGGTTAAGAAATTGGCAAAGAAGTACAACGCTTTCCTTGCTTCTGAAAGTGTTATCCGTCAAATTCCTCGTCTTTTGGGTACCTGGTTTGACAAAGGCTGGAAAxxxxxxxxxxxxxxxTTGACCCACTCCGAAGATATGGGAGCCAAGATCAACGAATTGAAGTGCACTGTTAGATTCCAATTGAAGAAGGTTCTTTGTATGGCTGTTGCTGTTGGAAACGTTAACATGACCCCTGAAGAATTGACTGCTAACATTCAACTCACCGTTAACTTCTTGATCTCCCTTTTGAAGAAGGGATGGCAAAACGTCAAGACCCTCAACATCAAGAGCACAAT

Fln Alignment:

HLKU4M004IJLRK___YNAFLASESVIRQIPRLLGTWFDKGWKxxxxLTHSEDMGAKINELKCTVRFQLKKVLCMAVAVGNVNMTPEELTANIQLTVNFLISLLKKGWQNVKTLNIKST
A9NNV9________________YHAFLASEAIIKQIPRLLGPGLNKAGKxxxxVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain