SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150976

Length: 351 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150976
CCCACTGTTGTCAAGAACTTTGGTATTCTTTGCCGTTACAACAGTCGCACGGGTACCCACAATGTCTACAAAGAGTTCCGTGATTTGACTCGTGTTGGCGCCGTCCATCAACTTTACATGGACTTGGCTGCTCGTCATCGTGCTCGTTACAGGAGCATCCAAATCATTGAAGTCCGAACTCTTAATTCCAAAGAAGTTATCCGTGACAACATCAAACAACTCCAGAGCTCAAAGATCAGATTCCCTCTTCCTCACAGACTTTATCGTCCTTCCGACAGACAATTCAGGAAGACTTTCTCTTTCAAGCGACCACACACCCACTTTGGTTAAATTATCTGGATCGCGAGTTGA

Ace file of the UniGene sp_v3.0_unigene150976 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to ribosomal protein L18a n=1 Tax=Hydra magnipapillata RepID=UPI00019251F6	-	-	5.0e-30	60%
FL-Next	sp=60S ribosomal protein L18a; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Ribosomal protein L18a	-	-	2.261e-13	-

Source	Gene names
Sma3	At1g29965; At1g29970; At2g34480; CHLREDRAFT_146844; GSVIVT00003438001; GSVIVT00003441001; GSVIVT00005870001; OSJNBb0053D02.16; OSJNBb0063G05.12; Os01g0666900; Os01g0752300; Os05g0565000; OsI_03189; OsI_03756; OsI_20997; OsJ_02939; OsJ_03475; OsJ_19561; PH

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR002670	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34480.1	Ribosomal protein L18ae/LX family protein chr2:14532916-14534161 REVERSE LENGTH=178	5.0e-31	49%
RefSeq	Arabidopsis thaliana	NP_180995.1	60S ribosomal protein L18a-2 [Arabidopsis thaliana]	7.0e-31	49%
RefSeq	Populus trichocarpa	XP_002338831.1	predicted protein, partial [Populus trichocarpa]	5.0e-31	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0B9

Fln msg: your sequence is shorter than subject: 110 - 178

Fln protein: PTVVKNFGILCRYNSRTGTHNVYKEFRDLTRVGAVHQLYMDLAARHRARYRSIQIIEVRTLNSKEVIRDNIKQLQSSKIRFPLPHRLYRPSDRQFRKTFSFKRPHTHFG*

Protein Length: 111

Fln nts: CCCACTGTTGTCAAGAACTTTGGTATTCTTTGCCGTTACAACAGTCGCACGGGTACCCACAATGTCTACAAAGAGTTCCGTGATTTGACTCGTGTTGGCGCCGTCCATCAACTTTACATGGACTTGGCTGCTCGTCATCGTGCTCGTTACAGGAGCATCCAAATCATTGAAGTCCGAACTCTTAATTCCAAAGAAGTTATCCGTGACAACATCAAACAACTCCAGAGCTCAAAGATCAGATTCCCTCTTCCTCACAGACTTTATCGTCCTTCCGACAGACAATTCAGGAAGACTTTCTCTTTCAAGCGACCACACACCCACTTTGGTTAA___ATTATCTGGATCGCGAGTTGA

Fln Alignment:

HLKU4M004JN3IY___PTVVKNFGILCRYNSRTGTHNVYKEFRDLTRVGAVHQLYMDLAARHRARYRSIQIIEVRTLNSKEVIRDNIKQLQSSKIRFPLPHRLYRPSDRQFRKTFSFKRPH
A9P0B9________________PTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVQQMYDEMASRHRVRYPCIQIIKTATIPNELCKRENTKQFQDSKIKFPLVYRKVRPPTRKLKTTFKASRPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain