SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150974

Length: 293 nt

UniGene Fasta

>sp_v3.0_unigene150974
AGGATACATGAATGGAAAGGATGGCAAGACTGCTGTCATTGTTGGTGCCGTCACTGATGATAAGCGCTTGTTGGATATTCCTCAATTGTCCATTGCTGCTCTTCGATTCACTGAGACTGCCAGAGCTAGAATCGTCAAGGCTGGTGGTGAGTGCATCACTTTGGATCAACTTGCCCTTCGTGCTCCTAAGGGTTCAAACACTGTTTTGCTTCGTGGTGCTAAGAATGCTCGTGATGCAGTTAGTTACTTCGGTCACCGCACTTCTCCCAACAATCCTCACACTCACGATGGTG

Ace file of the UniGene sp_v3.0_unigene150974

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L18 n=1 Tax=Ectocarpus siliculosus RepID=D7FML2_ECTSI	-	-	2.0e-34	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Ribosomal protein L18	-	-	6.591e-31	-

Source	Gene names
Sma3	At2g47570; At3g05590; At5g27850; CHLREDRAFT_195589; F14I23.10; F18C1.14; GSVIVT00022684001; GSVIVT00028030001; GSVIVT00033028001; LOC_Os03g22180; MICPUCDRAFT_25478; MICPUN_64167; OSTLU_33583; Os03g0341100; Os05g0155100; Os07g0674700; OsI_11506; OsI_18515;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-
Sma3	Peptidase S26A, signal peptidase I, lysine active site	IPR019757	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47570.1	Ribosomal protein L18e/L15 superfamily protein chr2:19515898-19516717 REVERSE LENGTH=135	6.0e-36	66%
RefSeq	Arabidopsis thaliana	NP_001189771.1	large subunit ribosomal protein L18e [Arabidopsis thaliana]	8.0e-36	66%
RefSeq	Populus trichocarpa	XP_002320999.1	predicted protein [Populus trichocarpa]	1.0e-38	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTM1

Fln msg: Distance to subject end: 24 aas, atg_distance in limit (1-15): atg_distance = 16, your sequence is shorter than subject: 95 - 134

Fln protein: MNGKDGKTAVIVGAVTDDKRLLDIPQLSIAALRFTETARARIVKAGGECITLDQLALRAPKGSNTVLLRGAKNARDAVSYFGHRTSPNNPHTHDG

Protein Length: 96

Fln nts: AGGATAC_-_ATGAATGGAAAGGATGGCAAGACTGCTGTCATTGTTGGTGCCGTCACTGATGATAAGCGCTTGTTGGATATTCCTCAATTGTCCATTGCTGCTCTTCGATTCACTGAGACTGCCAGAGCTAGAATCGTCAAGGCTGGTGGTGAGTGCATCACTTTGGATCAACTTGCCCTTCGTGCTCCTAAGGGTTCAAACACTGTTTTGCTTCGTGGTGCTAAGAATGCTCGTGATGCAGTTAGTTACTTCGGTCACCGCACTTCTCCCAACAATCCTCACACTCACGATGGTG

Fln Alignment:

HLKU4M004JQL6F___YMNGKDGKTAVIVGAVTDDKRLLDIPQLSIAALRFTETARARIVKAGGECITLDQLALRAPKGSNTVLLRGAKNARDAVSYFGHRTSPNNPHTH
C0PTM1________________YMQGKDDKIAVVVGTITDDNRVYELPPVKVTALRFTETARARILKAGGECLTFDQLALRAPLGQNTVLLRGPKSHREAVKHFGR--APGVPHSH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain