SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150912

Length: 408 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150912
AGAACAACTTCATTTGCACATCGAAAACATGGGCGGCCACGTCAAGCAGGTTCATTCCGACGAGGAGTACACCACCGAGATCAAGAACGCCAAGGGCTTGGTTGTGGTCGACTTCTTTGCCACGTGGTGCGGTCCTTGCAAGCGCATCGCCCTTTCCTGGAGCAATTGAGCACCGAGCTCACCAATGTGACGTTCTTGAAGGTTGACGTTGACGAGCTCGCTGACACTGCTGCCCGAGAGGGTATTTCGGCCATGCCGACCTTCTATTTCTTCAAGAACGGTGCCAAGATTGCCGACGTTGTTGGCGCCAGCCAGGACAAGTTGAAGTCCATCATCGACGCTAACAAGTAATAGTTTGAAACAGGCAACACCGCGCGACGCTTGCCTTCTCGCTCGCCTTTATTGCAT

Ace file of the UniGene sp_v3.0_unigene150912 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K874_SCHJY	-	-	3.0e-20	49%
FL-Next	sp=Thioredoxin H-type; Chlamydomonas reinhardtii (Chlamydomonas smithii).	-	-	0.0	45%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08710.1	ATH9, TRX H9, TH9 thioredoxin H-type 9 chr3:2645590-2646304 FORWARD LENGTH=140	2.0e-15	47%
RefSeq	Arabidopsis thaliana	NP_187483.1	thioredoxin H9 [Arabidopsis thaliana]	3.0e-15	47%
RefSeq	Populus trichocarpa	XP_002300738.1	thioredoxin h [Populus trichocarpa]	4.0e-16	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P80028

Fln msg: Overlapping hits, possible frame ERROR between 151 and 151,

Fln protein: MGGHVKQVHSDEEYTTEIKNAKGLVVVDFFATWCGPCKRIxxFLEQLSTELTNVTFLKVDVDELADTAAREGISAMPTFYFFKNGAKIADVVGASQDKLKSIIDANK*

Protein Length: 109

Fln nts: AGAACAACTTCATTTGCACATCGAAAAC_-_ATGGGCGGCCACGTCAAGCAGGTTCATTCCGACGAGGAGTACACCACCGAGATCAAGAACGCCAAGGGCTTGGTTGTGGTCGACTTCTTTGCCACGTGGTGCGGTCCTTGCAAGCGCATCxxxxxxTTCCTGGAGCAATTGAGCACCGAGCTCACCAATGTGACGTTCTTGAAGGTTGACGTTGACGAGCTCGCTGACACTGCTGCCCGAGAGGGTATTTCGGCCATGCCGACCTTCTATTTCTTCAAGAACGGTGCCAAGATTGCCGACGTTGTTGGCGCCAGCCAGGACAAGTTGAAGTCCATCATCGACGCTAACAAGTAA___TAGTTTGAAACAGGCAACACCGCGCGACGCTTGCCTTCTCGCTCGCCTTTATTGCAT

Fln Alignment:

HLKU4M004IDY8P___MGGHVKQVHSDEEYTTEIKNAKGL---VVVDFFATWCGPCKRIAPFLEQLSTELTN-VTFLKVDVDELADTAAREGISAMPTFYFFKNGAKIADVVGASQDKLKSII
P80028________________MGGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain