SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150908

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene150908
TCAACGTTGTCATCAACTACGACATGCCCGAATCTGCCGACTCGTACCTCCATCGCGTTGGTCGCGCTGGTCGTTTTGGTACCAAGGGTCTGGCCATCTCTTTCACCTCGACGCCCACTGACCAGGAAGTCCTCGAGAAGATCCAATCGCTCTTCCGCGTTAGCATTCCCACTCTCCCCGACGTCATCGACCCTTCGACCTACATGTCTGCTT

Ace file of the UniGene sp_v3.0_unigene150908

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase SUB2 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=SUB2_CRYNB	-	-	4.0e-23	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	AT5G11200; At5g11170; At5g11200; B1156H12.15-1; B1156H12.21-1; CHLREDRAFT_83282; F2I11_60; F2I11_90; GSVIVT00000354001; GSVIVT00032637001; LOC_Os01g36890; LOC_Os01g36920; MICPUCDRAFT_29880; MICPUN_109373; OSJNBa0024F24.6-1; OSTLU_89708; Os01g0549700; Os01

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11170.1	DEAD/DEAH box RNA helicase family protein chr5:3553334-3556646 FORWARD LENGTH=427	2.0e-26	67%
RefSeq	Arabidopsis thaliana	NP_850807.2	DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]	2.0e-26	67%
RefSeq	Populus trichocarpa	XP_002309623.1	predicted protein [Populus trichocarpa]	3.0e-26	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9C0

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 70 - 427

Fln protein: NVVINYDMPESADSYLHRVGRAGRFGTKGLAISFTSTPTDQEVLEKIQSLFRVSIPTLPDVIDPSTYMSA

Protein Length: 71

Fln nts: TCAACGTTGTCATCAACTACGACATGCCCGAATCTGCCGACTCGTACCTCCATCGCGTTGGTCGCGCTGGTCGTTTTGGTACCAAGGGTCTGGCCATCTCTTTCACCTCGACGCCCACTGACCAGGAAGTCCTCGAGAAGATCCAATCGCTCTTCCGCGTTAGCATTCCCACTCTCCCCGACGTCATCGACCCTTCGACCTACATGTCTGCTT

Fln Alignment:

HLKU4M004JJBZ7___NVVINYDMPESADSYLHRVGRAGRFGTKGLAISFTSTPTDQEVLEKIQSLFRVSIPTLPDVIDPSTYM
D5A9C0________________NIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPAQIDTSTYM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain