SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150834

Length: 301 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150834
AACGAGCAGAAGCTCGAGCACTGTCTGTCGCTCACGATCGAGAAGTTCCTCTCTCGCCGTCTTCAGACCCGTGTGTTCGAGGCGTCGCTCGCCAAATCGATCCACCACGCGCGTACGCTCATCAAACAGCGTCACATTCGCGTCGGCAAACGCATGGTCGATGTGCCTTCGTTCATGGTCCGCCTCGACTCCGAGAAGCACATCGAGTTCTCGCTGACGTCGCCGTACGGTGCGGGTCGCGCCGGCCGTGTGAAGCGAAAGTCTCTCCGCAACAAGAAATCGAAGGATGCCGAGTCTGACG

Ace file of the UniGene sp_v3.0_unigene150834 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S9, putative n=5 Tax=Plasmodium RepID=A5K9F8_PLAVS	-	-	4.0e-33	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	40S ribosomal protein S9	-	-	7.00649e-45	-

Source	Gene names
Sma3	At5g15200; At5g39850; CHLREDRAFT_195593; F8M21_90; GSVIVT00000124001; GSVIVT00020932001; GSVIVT00037003001; LOC_Os03g05980; LOC_Os11g38949; MICPUCDRAFT_49506; MICPUN_93744; MYH19.1; MYH19.10; OSTLU_94716; Os03g0154700; Os11g0602500; Os11g0602600; OsI_1006

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4/S9, N-terminal	IPR001912	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Ribosomal protein S4/S9, eukaryotic/archaeal	IPR005710	-	-
Sma3	Ribosomal protein S4, conserved site	IPR018079	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G15200.1	Ribosomal protein S4 chr5:4935124-4936334 REVERSE LENGTH=198	5.0e-39	59%
RefSeq	Arabidopsis thaliana	NP_197024.1	40S ribosomal protein S9-1 [Arabidopsis thaliana]	6.0e-39	59%
RefSeq	Populus trichocarpa	XP_002324730.1	predicted protein [Populus trichocarpa]	9.99995e-41	64%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LND2

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 100 - 197

Fln protein: NEQKLEHCLSLTIEKFLSRRLQTRVFEASLAKSIHHARTLIKQRHIRVGKRMVDVPSFMVRLDSEKHIEFSLTSPYGAGRAGRVKRKSLRNKKSKDAESD

Protein Length: 101

Fln nts: AACGAGCAGAAGCTCGAGCACTGTCTGTCGCTCACGATCGAGAAGTTCCTCTCTCGCCGTCTTCAGACCCGTGTGTTCGAGGCGTCGCTCGCCAAATCGATCCACCACGCGCGTACGCTCATCAAACAGCGTCACATTCGCGTCGGCAAACGCATGGTCGATGTGCCTTCGTTCATGGTCCGCCTCGACTCCGAGAAGCACATCGAGTTCTCGCTGACGTCGCCGTACGGTGCGGGTCGCGCCGGCCGTGTGAAGCGAAAGTCTCTCCGCAACAAGAAATCGAAGGATGCCGAGTCTGACG

Fln Alignment:

HLKU4M004I8CBT___EQKLEHCLSLTIEKFLSRRLQTRVFEASLAKSIHHARTLIKQRHIRVGKRMVDVPSFMVRLDSEKHIEFSLTSPYGAGRAGRVKRKSLRNKKSKDAESD
B8LND2________________QSKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNLKAASKKAAGGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain