SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150823

Length: 376 nt

UniGene Fasta

>sp_v3.0_unigene150823
CCGTCGGCCGTATCCACCGCTTCCTCAAGCAGCGCACCACATCGCACGGTCGCGTCGGAGCCACTGCAGCAGTCTACAGTGCTGCCATCCTTGAGTATCTCACTGCCGAAGTCCTCGAGCTGGCAGGCAACGCCTCGAAGGATCTCAAGGTCAAGCGTATCACACCGCGTCACTTGCACCTGGCTATCCGTGGTGATGAGGAGTTGGACACGCTGATCAAGGCAACCATTGCCGGAGGAGGCGTCATTCCACACATCCATCGCTACCTGATGACGAAGAAGGGCCAGACACAGGCGCAGCCTGGTCCGAACCAGAAGGCTTAAAAGGCCGTCGACCGCTTGACTGTCTGTCTCTAGCGTGTATTTATCTCTCCTCT

Ace file of the UniGene sp_v3.0_unigene150823

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2A.V n=6 Tax=Chromadorea RepID=H2AV_CAEEL	-	-	1.96182e-44	97%
FL-Next	sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Histone H2A	-	-	0.0	-

Source	Gene names
Sma3	6A06; A34; At1g08880; At1g51060; At1g52740; At1g54690; At2g38810; At3g20670; At3g54560; At4g13570; At4g27230; At5g02560; At5g27670; At5g54640; At5g59870; B1377B10.25; CHLREDRAFT_100147; CHLREDRAFT_100223; CHLREDRAFT_107113; CHLREDRAFT_109409; CHLREDRAFT_1

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2A	IPR002119	-	-
Sma3	BSD	IPR005607	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G52740.1	HTA9 histone H2A protein 9 chr1:19645409-19646221 FORWARD LENGTH=134	83%
RefSeq	Arabidopsis thaliana	NP_175683.1	histone H2A protein 9 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002324843.1	histone 2 [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMZ1

Fln msg: your sequence is shorter than subject: 107 - 145

Fln protein: VGRIHRFLKQRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMTKKGQTQAQPGPNQKA*

Protein Length: 108

Fln nts: CCGTCGGCCGTATCCACCGCTTCCTCAAGCAGCGCACCACATCGCACGGTCGCGTCGGAGCCACTGCAGCAGTCTACAGTGCTGCCATCCTTGAGTATCTCACTGCCGAAGTCCTCGAGCTGGCAGGCAACGCCTCGAAGGATCTCAAGGTCAAGCGTATCACACCGCGTCACTTGCACCTGGCTATCCGTGGTGATGAGGAGTTGGACACGCTGATCAAGGCAACCATTGCCGGAGGAGGCGTCATTCCACACATCCATCGCTACCTGATGACGAAGAAGGGCCAGACACAGGCGCAGCCTGGTCCGAACCAGAAGGCTTAA___AAGGCCGTCGACCGCTTGACTGTCTGTCTCTAGCGTGTATTTATCTCTCCTCT

Fln Alignment:

HLKU4M004JCO8F___VGRIHRFLKQRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMTKKGQ
A9NMZ1________________VGRIHRLLKSRISANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain