SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150710

Length: 389 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150710
AAGCGTGTCCGCAAGGTCAGGACCAACGTGCATTTCTTCCGCCCGAAGACCCTCCGCCTTCCCCGCAACCCCAAGTACCCGAGGAGGTCGGTTCCCCGCACGAACAAGCTCGACCAGTTCCGCGTTCTGAGGCACCCGCTCACGACGGAAAGCGCGATGAAGAAGATTGAGGACAACAACACCCTCGTCTTCATCGTCGACCTCAAGGCCAACAAGCGTCAGATTAAGGACGCTGTGAAGAAGATGTACGACATCACCGCCGAGAAGGTCAACACCCTCGTGAGGCCCGACGGCAAGAAGAAGGCTTACGTCCGCCTCACCGGTGACTTTGACGCCCTTGACATTGCTAACAGGATTGGTATCATACTAAACCTGTCAACGCCCTCTCG

Ace file of the UniGene sp_v3.0_unigene150710 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L23a (Fragment) n=1 Tax=Argopecten irradians RepID=Q8ITB8_AEQIR	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Ribosomal protein L23a	-	-	3.983e-09	-

Source	Gene names
Sma3	At2g39460; At3g55280; B1051E10.13; CHLREDRAFT_174711; F12L6.12; GSVIVT00018552001; H0311C03.2; MICPUCDRAFT_33613; MICPUN_91476; OSJNBa0029H02.21; OSTLU_16602; Os01g0348700; Os04g0501000; OsI_01816; OsI_16517; OsI_16522; OsJ_01678; OsJ_15349; Ot08g04030; P

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L23/L25, conserved site	IPR001014	-	-
Sma3	Ribosomal protein L23/L25, N-terminal	IPR005633	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Ribosomal protein L25/L23	IPR013025	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55280.1	RPL23AB ribosomal protein L23AB chr3:20500667-20501519 FORWARD LENGTH=154	70%
RefSeq	Arabidopsis thaliana	NP_001078293.1	60S ribosomal protein L23a-2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002314202.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPD2

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 129 - 154

Fln protein: KRVRKVRTNVHFFRPKTLRLPRNPKYPRRSVPRTNKLDQFRVLRHPLTTESAMKKIEDNNTLVFIVDLKANKRQIKDAVKKMYDITAEKVNTLVRPDGKKKAYVRLTGDFDALDIANRIGIILNLSTPS

Protein Length: 130

Fln nts: AAGCGTGTCCGCAAGGTCAGGACCAACGTGCATTTCTTCCGCCCGAAGACCCTCCGCCTTCCCCGCAACCCCAAGTACCCGAGGAGGTCGGTTCCCCGCACGAACAAGCTCGACCAGTTCCGCGTTCTGAGGCACCCGCTCACGACGGAAAGCGCGATGAAGAAGATTGAGGACAACAACACCCTCGTCTTCATCGTCGACCTCAAGGCCAACAAGCGTCAGATTAAGGACGCTGTGAAGAAGATGTACGACATCACCGCCGAGAAGGTCAACACCCTCGTGAGGCCCGACGGCAAGAAGAAGGCTTACGTCCGCCTCACCGGTGACTTTGACGCCCTTGACATTGCTAACAGGATTGGTATCATACTAAACCTGTCAACGCCCTCTCG

Fln Alignment:

HLKU4M004IMBJB___KRVRKVRTNVHFFRPKTLRLPRNPKYPRRSVPRTNKLDQFRVLRHPLTTESAMKKIEDNNTLVFIVDLKANKRQIKDAVKKMYDITAEKVNTLVRPDGKKKAYVRLTGDFDALDIANRIGII
A9NPD2________________RKTRKIRTSVIFHRPRTFKRPRNPKYPRISAPPRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFIVDVRADKKKIKDAVKKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain