SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150675

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene150675
TCCTATTCTTCTTTCAATCGTGCAAAGAACTGGGTGAAGGAACTCCAAAGACAAGGAAACGCCAATATTGTGATTGCTTGGCAGGGAACAAGTTGGATCTTGCTGCAAAAAGGGAAGTCCAGACAGAGGAAGCCCAAACGTATGCTGACGAAAATGGCAGTTTGTTGATGGAAACATCCGCCAAAACCGACACAAACGTTAAGGCTTTGTTCGTTGCAATTGCC

Ace file of the UniGene sp_v3.0_unigene150675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ras-related protein Rab-5C n=1 Tax=Caligus clemensi RepID=C1C0G6_9MAXI	-	-	2.0e-15	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Rab5/RabF-family small GTPase	-	-	1.951e-08	-

Source	Gene names
Sma3	ARA7; AT4g19640; At4g19640; F24J7.190; LOC_Os03g46390; MICPUCDRAFT_49597; OSJNBa0056E06.11; Os03g0666500; Ot08g02530; PHYPADRAFT_179911; PHYPADRAFT_188295; PpARA6a; RAB5; RCOM_1425460; Rab5; RabF1; RabF2A1; THAPSDRAFT_261381; chi3153;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR015599	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G19640.1	ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B Ras-related small GTP-binding family protein chr4:10687441-10689449 REVERSE LENGTH=200	3.0e-13	65%
RefSeq	Arabidopsis thaliana	NP_193699.1	Ras-related small GTP-binding family protein [Arabidopsis thaliana]	3.0e-13	65%
RefSeq	Populus trichocarpa	XP_002303285.1	predicted protein [Populus trichocarpa]	7.0e-14	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKR1

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 74 - 200

Fln protein: LFFFQSCKELGEGTPKTRKRQYCDCLAGNKLDLAAKREVQTEEAQTYADENGSLLMETSAKTDTNVKALFVAIA

Protein Length: 75

Fln nts: TCCTATTCTTCTTTCAATCGTGCAAAGAACTGGGTGAAGGAACTCCAAAGACAAGGAAACGCCAATATTGTGATTGCTTGGCAGGGAACAAGTTGGATCTTGCTGCAAAAAGGGAAGTCCAGACAGAGGAAGCCCAAACGTATGCTGACGAAAATGGCAGTTTGTTGATGGAAACATCCGCCAAAACCGACACAAACGTTAAGGCTTTGTTCGTTGCAATTGCC

Fln Alignment:

HLKU4M004IF65I___LAGNKLDLAAKREVQTEEAQTYADENGSLLMETSAKTDTNVKALFVAIA
A9NKR1________________LAGNKADVAAKRKVEAEEAETYAKENGLFFMETSAKTAQNVNELFYEIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain