SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150652

Length: 274 nt

UniGene Fasta

>sp_v3.0_unigene150652
AATGGCACAAGAAGATCGCCAAGAGATCTAGAGTCAAGCCCTTCATCAAGAGAGTTAACTACAACCACATTATGCCAACTAGATATGCTTTGGATCTTGACTTGAAAAAGGTCGTCACCAAGCATTCTTTTGAAAAGGGAAAGAGAAAGTCCACCCGTAAGGCCGTGAAGAAGTTGTTCGAAGCCAAATACAAGACTGGAAAGAGCAAGTGGTTCTTCACACGCCTCAGGTTCTAAAGCTGTTCTCGTCAATATGAGAATAAAGGAACGGCATG

Ace file of the UniGene sp_v3.0_unigene150652

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L27 n=1 Tax=Selaginella moellendorffii RepID=D8QZM0_SELML	-	-	6.0e-23	67%
FL-Next	sp=60S ribosomal protein L27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	60S ribosomal protein L27	-	-	0.0	-

Source	Gene names
Sma3	At2g32220; At3g22230; At4g15000; CHLREDRAFT_260; F22D22.3; GSVIVT00025743001; GSVIVT00030172001; MICPUCDRAFT_34421; MICPUN_107054; MKA23.13; OSTLU_31471; Ot05g00200; PHYPADRAFT_165124; PHYPADRAFT_187092; PHYPADRAFT_194649; PHYPADRAFT_198656; POPTRDRAFT_56

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L27e	IPR001141	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L27e, conserved site	IPR018262	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32220.1	Ribosomal L27e protein family chr2:13678945-13679352 FORWARD LENGTH=135	8.0e-24	56%
RefSeq	Arabidopsis thaliana	NP_180781.1	60S ribosomal protein L27-1 [Arabidopsis thaliana]	1.0e-23	56%
RefSeq	Populus trichocarpa	XP_002323180.1	predicted protein [Populus trichocarpa]	7.0e-24	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABK8

Fln msg: your sequence is shorter than subject: 78 - 135

Fln protein: WHKKIAKRSRVKPFIKRVNYNHIMPTRYALDLDLKKVVTKHSFEKGKRKSTRKAVKKLFEAKYKTGKSKWFFTRLRF*

Protein Length: 79

Fln nts: AATGGCACAAGAAGATCGCCAAGAGATCTAGAGTCAAGCCCTTCATCAAGAGAGTTAACTACAACCACATTATGCCAACTAGATATGCTTTGGATCTTGACTTGAAAAAGGTCGTCACCAAGCATTCTTTTGAAAAGGGAAAGAGAAAGTCCACCCGTAAGGCCGTGAAGAAGTTGTTCGAAGCCAAATACAAGACTGGAAAGAGCAAGTGGTTCTTCACACGCCTCAGGTTCTAA___AGCTGTTCTCGTCAATATGAGAATAAAGGAACGGCATG

Fln Alignment:

HLKU4M004H7164___KKIAKRSRVKPFIKRVNYNHIMPTRYALDLDLKKVVTKHSFE-KGKRKSTRKAVKKLFEAKYKTGKSKWFFTRLRF
D5ABK8________________KKTAKKSRLKAFIKVVNYNHIMPTRYSLDVDLKNVVTFDKLETRDKKVAALKGVKASFEERFKAGKNRWFFTKLRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain