SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150452

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene150452
TGGCGGCTGTCTTCTGGGAGATGATTATGATCACCGGTCTTGAGGTTACAGGAGCCTGGTATGGAATCCCTATGGTCTTTGTTTGTTTTGCAGCATGGGCCACCTTGACAGTGGGTGTGTTGTTGTTGATGGAATCCCTTTCTGCTTTCCTTCACGCTCTTCGGCTGCACTGGGTCGAATTCCAAAACAAGTTCTATATGGGTGACGG

Ace file of the UniGene sp_v3.0_unigene150452

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: v-type proton ATPase 116 kDa subunit a isoform 4-like, partial n=1 Tax=Pongo abelii RepID=UPI0001D5EE94	-	-	5.0e-18	66%
FL-Next	tr=H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily; Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga).	-	-	0.0	58%
Sma3	H+-or Na+-translocating f-type, v-type and A-type ATPase superfamily	-	-	1.528e-07	-

Source	Gene names
Sma3	At2g21410; MICPUCDRAFT_16972; MICPUN_97767; Ot08g03920; POPTRDRAFT_801528;

Source	GOs	Term	Type	Identity
Sma3	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0/A0 complex, 116kDa subunit	IPR002490	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39080.1	VHA-A3 vacuolar proton ATPase A3 chr4:18209513-18214752 FORWARD LENGTH=821	3.0e-15	52%
RefSeq	Arabidopsis thaliana	NP_568051.1	V-type H+-transporting ATPase subunit I [Arabidopsis thaliana]	4.0e-15	52%
RefSeq	Populus trichocarpa	XP_002313024.1	predicted protein [Populus trichocarpa]	1.0e-14	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C1FG71

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 68 - 797

Fln protein: AAVFWEMIMITGLEVTGAWYGIPMVFVCFAAWATLTVGVLLLMESLSAFLHALRLHWVEFQNKFYMGD

Protein Length: 69

Fln nts: TGGCGGCTGTCTTCTGGGAGATGATTATGATCACCGGTCTTGAGGTTACAGGAGCCTGGTATGGAATCCCTATGGTCTTTGTTTGTTTTGCAGCATGGGCCACCTTGACAGTGGGTGTGTTGTTGTTGATGGAATCCCTTTCTGCTTTCCTTCACGCTCTTCGGCTGCACTGGGTCGAATTCCAAAACAAGTTCTATATGGGTGACGG

Fln Alignment:

HLKU4M004JP8SK___AAVFWEMIMITGLEVTGAWYGIPMVFVCFAAWATLTVGVLLLMESLSAFLHALRLHWVEFQNKFYMGD
C1FG71________________SAVFWDRVFMAAVATQNP---VAMV-VGFAVWASATIGVLMLMESLSAFLHALRLHWVEYQNKFYRGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain