SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150446

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150446
AACTCTTCTTACTTCGTGGAGTGGATTCCCAACAACGTGAAGGCATCCATCTGCGACATCCCTCCCAAAGGCCTCAAGATGTCCACCACCTTCGTCGGCAACACCACCGCGATCCAGGAGGTGTGGAAGCGCGTGAGCGAGCAGTTCACGGCGATGTTCCGCAGAAAGGCGTTCTTGCACTGGTACACAGGCGAGGGCATGGACGAGATGGAGTTCACGGAGGCCGAGTCCAACATGAACGATCTCGTGTCTGAGTACCAACAGTACCAAGACGCCACTGCTGAGGAGGAGGGTGAGTTCGACGAAGACGAGGAGGGTGATGACATGATGGGTTAAGTTGAGGTTCTTCGTTGAACAGATGTCAAGATGGTCTTTGAATCAGGTTTATCAGAATGCCTATTCTTGTTTCTTGTGTAATGAACTATTATGATACCC

Ace file of the UniGene sp_v3.0_unigene150446 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin beta-5 chain n=14 Tax=Eukaryota RepID=TBB5_ECTVR	-	-	0.0	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Beta-tubulin	-	-	3.38e-12	-

Source	Gene names
Sma3	AT4G20890; At1g20010; At1g75780/T4O12_29; At2g29550; At5g12250; At5g12250/MXC9_21; At5g23860; At5g62690; BTub-1; BTub1; F16P2.7; GSVIVT00000394001; GSVIVT00000417001; GSVIVT00009147001; GSVIVT00014415001; GSVIVT00017326001; GSVIVT00017820001; GSVIVT000214

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20010.1	TUB5 tubulin beta-5 chain chr1:6938033-6940481 REVERSE LENGTH=449	89%
RefSeq	Arabidopsis thaliana	NP_564101.1	tubulin beta-5 chain [Arabidopsis thaliana]	89%
RefSeq	Populus trichocarpa	XP_002307727.1	tubulin, beta chain [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg: your sequence is shorter than subject: 112 - 444

Fln protein: NSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDEDEEGDDMMG*

Protein Length: 113

Fln nts: AACTCTTCTTACTTCGTGGAGTGGATTCCCAACAACGTGAAGGCATCCATCTGCGACATCCCTCCCAAAGGCCTCAAGATGTCCACCACCTTCGTCGGCAACACCACCGCGATCCAGGAGGTGTGGAAGCGCGTGAGCGAGCAGTTCACGGCGATGTTCCGCAGAAAGGCGTTCTTGCACTGGTACACAGGCGAGGGCATGGACGAGATGGAGTTCACGGAGGCCGAGTCCAACATGAACGATCTCGTGTCTGAGTACCAACAGTACCAAGACGCCACTGCTGAGGAGGAGGGTGAGTTCGACGAAGACGAGGAGGGTGATGACATGATGGGTTAA___GTTGAGGTTCTTCGTTGAACAGATGTCAAGATGGTCTTTGAATCAGGTTTATCAGAATGCCTATTCTTGTTTCTTGTGTAATGAACTATTATGATACCC

Fln Alignment:

HLKU4M004JMMHY___NSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
C0PT51________________NSSYFVEWIPHNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain