SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150421

Length: 259 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150421
TGTGCTGAGCTCAAGAACAGAGCTATTAGCAAGGAATTGAAAGTGTGTGGCCCTGTCCGCATGCCTACCAAGATCTTGAGAATGACTACCCGCAAATCTCCTTGTGGTGAAGGTACCAATACCTGGGACCGCTTCCAGATGAGAATCCACAAGCGCATCATTCGATTTGTACTCCCTGCTGATGAAGTTAGACAAATCACAACATCAGCATTGAGCCTGGTGTTGATGTTGAGGTTGACCATTGCCAATCAGGCTTAGG

Ace file of the UniGene sp_v3.0_unigene150421 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S20 (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01D50_OSTTA	-	-	8.0e-22	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	40S ribosomal protein S20	-	-	1.148e-14	-

Source	Gene names
Sma3	At3g45030; At3g47370; At5g62300; CHLREDRAFT_195592; F14D17_100; LOC_Os03g14530; LOC_Os10g08930; MICPUCDRAFT_35904; MICPUN_57744; MMI9.13; MMI9_120; MtrDRAFT_AC144805g11v2; MtrDRAFT_AC157891g29v2; OSJNBa0071I20.6; OSTLU_30430; Os03g0249400; Os06g0134000; O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S10	IPR001848	-	-
Sma3	Ribosomal protein S10, eukaryotic/archaeal	IPR005729	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47370.2	Ribosomal protein S10p/S20e family protein chr3:17453671-17454437 REVERSE LENGTH=122	1.0e-26	53%
RefSeq	Arabidopsis thaliana	NP_001030826.1	40S ribosomal protein S20-2 [Arabidopsis thaliana]	1.0e-26	53%
RefSeq	Populus trichocarpa	XP_002302530.1	predicted protein [Populus trichocarpa]	3.0e-28	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR88

Fln msg: your sequence is shorter than subject: 86 - 122

Fln protein: CAELKNRAISKELKVCGPVRMPTKILRMTTRKSPCGEGTNTWDRFQMRIHKRIIRFVLPADEVRQITTSALSLVLMLRLTIANQA*

Protein Length: 87

Fln nts: TGTGCTGAGCTCAAGAACAGAGCTATTAGCAAGGAATTGAAAGTGTGTGGCCCTGTCCGCATGCCTACCAAGATCTTGAGAATGACTACCCGCAAATCTCCTTGTGGTGAAGGTACCAATACCTGGGACCGCTTCCAGATGAGAATCCACAAGCGCATCATTCGATTTGTACTCCCTGCTGATGAAGTTAGACAAATCACAACATCAGCATTGAGCCTGGTGTTGATGTTGAGGTTGACCATTGCCAATCAGGCTTAG___G

Fln Alignment:

HLKU4M004H18TL___CAELKNRAISKELKVCGPVRMPTKILRMTTRKSPCGEGTNTWDRFQMRIHKRIIRFVLPADEVRQITTSALSLVLMLRLTIAN
A9NR88________________CADLVRGAKDKRLKVKGPVRMPTKVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTIAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain