SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150329

Length: 354 nt

UniGene Fasta

>sp_v3.0_unigene150329
TGGATAACATTAGCAATAACCTCCTCATTGGCGCCACCAACGCCGAAAACGGCAAGATCAATGCGGTAGTGAACCTCTTTACTGGCGAGGAGAAACCCGTGCCCGACACGGCTCGCGCATACAAGGCCAAGAATATTCCTTGGGTGGTGGTTGGTGACGAGAACTACGGAGAGGGCTCCAGCCGCGAACATGCAGCCTTGGAACCCCGGCATTTGGGAGGCGTGGCCGTCATTGTTAGGAGTTTCGCGCGTATTCACGAAACCAACCTCAAGAAGCAAGGCATGCTGCCCCTCACGTTCGCCGATCCCGCCGACTACGACAAGGTGTCGGGCACCGACAAGATCTCCATTCTCG

Ace file of the UniGene sp_v3.0_unigene150329

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aconitate hydratase n=1 Tax=Dictyostelium purpureum RepID=F0ZME8_DICPU	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Isocitrate dehydrogenase/citrate hydrolyase	-	-	5.819e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aconitate hydratase.	EC:4.2.1.3	-	6.981e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	6.981e-08	%
Sma3	Glyoxylate and dicarboxylate metabolism	00630	6.981e-08	%
Sma3	Carbon fixation pathways in prokaryotes	00720	6.981e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.981e-08	%
Sma3	Biosynthesis of terpenoids and steroids	01062	6.981e-08	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	6.981e-08	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	6.981e-08	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	6.981e-08	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	6.981e-08	%
Sma3	Biosynthesis of plant hormones	01070	6.981e-08	%
Sma3	Metabolic pathways	01100	6.981e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	6.981e-08	%

Source	Gene names
Sma3	ACH1; CHLREDRAFT_129025; MICPUCDRAFT_70903; MICPUN_60441;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	aconitate hydratase activity	GO:0003994	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aconitase A/isopropylmalate dehydratase small subunit, swivel	IPR000573	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha	IPR001030	-	-
Sma3	Aconitase, mitochondrial-like	IPR006248	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase, swivel	IPR015928	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	IPR015931	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2	IPR015932	-	-
Sma3	Aconitase/isopropylmalate dehydratase	IPR015937	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX49

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 117 - 565

Fln protein: DNISNNLLIGATNAENGKINAVVNLFTGEEKPVPDTARAYKAKNIPWVVVGDENYGEGSSREHAALEPRHLGGVAVIVRSFARIHETNLKKQGMLPLTFADPADYDKVSGTDKISIL

Protein Length: 118

Fln nts: TGGATAACATTAGCAATAACCTCCTCATTGGCGCCACCAACGCCGAAAACGGCAAGATCAATGCGGTAGTGAACCTCTTTACTGGCGAGGAGAAACCCGTGCCCGACACGGCTCGCGCATACAAGGCCAAGAATATTCCTTGGGTGGTGGTTGGTGACGAGAACTACGGAGAGGGCTCCAGCCGCGAACATGCAGCCTTGGAACCCCGGCATTTGGGAGGCGTGGCCGTCATTGTTAGGAGTTTCGCGCGTATTCACGAAACCAACCTCAAGAAGCAAGGCATGCTGCCCCTCACGTTCGCCGATCCCGCCGACTACGACAAGGTGTCGGGCACCGACAAGATCTCCATTCTCG

Fln Alignment:

HLKU4M004JGXP1___NGKINA-VVNLFTGEEKPVPDTARAYKAKNIPWVVVGDENYGEGSSREHAALEPRHLGGVAVIVRSFARIHETNLKKQGMLPLTFADPADYDK--VSGTDKISI
A9NX49________________NGEVGPKTIHIPTGEKLSVYDAAIRYKSAGQDTIVLAGAEYGSGSSRDWAAKGPMLQGVKAVISKSFERIHRSNLVGMGIIPLCFKSGEDAESLGLTGHERYSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain