SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150324

Length: 389 nt

UniGene Fasta

>sp_v3.0_unigene150324
CCGACCAGCACCACCAGAAGCAAGAATGTCCCAAGAATCTTCGAACTCCAAGGCTTACCCGCTTGCTCCTGCCGTTCTGTCAAACAAAATTCTGGATCTGGTCACCAGTGCTAACAATCAACATCAACTTAGAAAAGGAGCAAATGAAGCGACCAAATCGTTAAACAGAGGGCAGGCCGAAGTTATTATTATGGCTGCTGACACAGAGCCTTTGGAGATTCTGTTGCATCTTCCTCTCCTTTGTGAGGATAAGAATGTTCCTTATGTTTTTGTTCCTTCGAAGGCTTCTTTGGGAAGAGCTTGCGGTGTGTCGAGATCGGTCATTGCCTGCGCCGTGACATCTCTTGCTGACTCGAATCTTCAATCCCAGATTGATACAATCAAGCTTC

Ace file of the UniGene sp_v3.0_unigene150324

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L7Ae-like [Arabidopsis thaliana]	-	-	2.0e-30	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	NHP2-like protein 1	-	-	3.279e-08	-

Source	Gene names
Sma3	AT4g12600; AT4g22380; At4g12600; At5g20160; GSVIVT00016877001; GSVIVT00018373001; L7Ae; LOC_Os03g13800; LOC_Os10g03540; MICPUCDRAFT_35474; MICPUN_89886; OSJNAa0049K09.17; OSJNBa0056A20.5; OSTLU_41236; Os03g0241200; Os10g0124000; OsI_10701; OsI_32608; OsJ_

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	IPR002415	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22380.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein chr4:11812041-11812922 REVERSE LENGTH=128	6.0e-39	68%
RefSeq	Arabidopsis thaliana	NP_192997.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	3.0e-39	70%
RefSeq	Populus trichocarpa	XP_002327218.1	predicted protein [Populus trichocarpa]	6.0e-40	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNS4

Fln msg: STOP codon was not found. Distance to subject end: 7 aas,

Fln protein: MSQESSNSKAYPLAPAVLSNKILDLVTSANNQHQLRKGANEATKSLNRGQAEVIIMAADTEPLEILLHLPLLCEDKNVPYVFVPSKASLGRACGVSRSVIACAVTSLADSNLQSQIDTIKL

Protein Length: 122

Fln nts: CCGACCAGCACCACCAGAAGCAAGA_-_ATGTCCCAAGAATCTTCGAACTCCAAGGCTTACCCGCTTGCTCCTGCCGTTCTGTCAAACAAAATTCTGGATCTGGTCACCAGTGCTAACAATCAACATCAACTTAGAAAAGGAGCAAATGAAGCGACCAAATCGTTAAACAGAGGGCAGGCCGAAGTTATTATTATGGCTGCTGACACAGAGCCTTTGGAGATTCTGTTGCATCTTCCTCTCCTTTGTGAGGATAAGAATGTTCCTTATGTTTTTGTTCCTTCGAAGGCTTCTTTGGGAAGAGCTTGCGGTGTGTCGAGATCGGTCATTGCCTGCGCCGTGACATCTCTTGCTGACTCGAATCTTCAATCCCAGATTGATACAATCAAGCTTC

Fln Alignment:

HLKU4M004IWYAK___ESSNSKAYPLAPAVLSNKILDLVTSANNQHQLRKGANEATKSLNRGQAEVIIMAADTXXXXXXXXXXXXCEDKNVPYVFVPSKASLGRACGVSRSVIACAVTSLADSNLQSQIDTIK
A9NNS4________________EAVNPKAYPLADSQLSITIMDLVQQAANYKQLKKGANEATKTLNRGIAEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain