SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150308

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene150308
CCCGCTATGATTACGAGGAAGTCACCTCCGAGGGTGCCAACAAGATGATTGCTCACCTTCGCTCATTCATTGCCGATCCGTCGTCACTGACCAGCCAGACATTTGAGAACGGCTACAAGGTCGCAACCATCGATGATTTCCAGTATCTTGATCCCACCAACGGCGTTGTGACAACCAATCAGGGCATCCGCATCATCTTCACTGACAGCTCGCGTGCCATCCTTCGTCTCAGCGGCACTGGCAGCAGTGGTGCCACCGTCCGCCTCTACATTGACAGCTACATTTCTGACGCTAGCAAATACGAGGCCGATGCGCAGACTGTGCTGCAGCCGCTGATCAAGACCACCCTTCAGATCTCTCAGCTGCAAGAGTTCCTGCAGCGGGATGCACCCACTGTGATCACATAATGGATGCAGACGAAATACAACACCAGCAGTCC

Ace file of the UniGene sp_v3.0_unigene150308 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoglucomutase n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9BW65_9EUKA	-	-	1.0e-35	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	PGM	-	-	2.309e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoglucomutase.	EC:5.4.2.2	-	1.132e-28	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.132e-28	%
Sma3	Pentose phosphate pathway	00030	1.132e-28	%
Sma3	Galactose metabolism	00052	1.132e-28	%
Sma3	Purine metabolism	00230	1.132e-28	%
Sma3	Starch and sucrose metabolism	00500	1.132e-28	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	1.132e-28	%
Sma3	Metabolic pathways	01100	1.132e-28	%
Sma3	Biosynthesis of secondary metabolites	01110	1.132e-28	%

Source	Gene names
Sma3	At5g51820; CHLREDRAFT_81483; GPM1a\|GPM1b; GSVIVT00010600001; LOC_Os10g11140; MICPUCDRAFT_70805; MICPUN_112722; MIO24.4; OSTLU_42958; Os10g0189100; OsI_32951; OsJ_30930; Ot15g02630; PGM; PGM I; PGM II; PGM1; PGMP; PHYPADRAFT_107070; PHYPADRAFT_107844; POPT

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phosphoglucomutase activity	GO:0004614	Molecular Function	-
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	detection of gravity	GO:0009590	Biological Process	-
Sma3	starch biosynthetic process	GO:0019252	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase superfamily	IPR005841	-	-
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	IPR005846	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51820.1	PGM, ATPGMP, PGM1, STF1 phosphoglucomutase chr5:21063531-21067933 REVERSE LENGTH=623	2.0e-38	52%
RefSeq	Arabidopsis thaliana	NP_199995.1	phosphoglucomutase [Arabidopsis thaliana]	3.0e-38	52%
RefSeq	Populus trichocarpa	XP_002322433.1	predicted protein [Populus trichocarpa]	1.0e-39	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXL7

Fln msg: your sequence is shorter than subject: 135 - 645

Fln protein: RYDYEEVTSEGANKMIAHLRSFIADPSSLTSQTFENGYKVATIDDFQYLDPTNGVVTTNQGIRIIFTDSSRAILRLSGTGSSGATVRLYIDSYISDASKYEADAQTVLQPLIKTTLQISQLQEFLQRDAPTVIT*

Protein Length: 136

Fln nts: CCCGCTATGATTACGAGGAAGTCACCTCCGAGGGTGCCAACAAGATGATTGCTCACCTTCGCTCATTCATTGCCGATCCGTCGTCACTGACCAGCCAGACATTTGAGAACGGCTACAAGGTCGCAACCATCGATGATTTCCAGTATCTTGATCCCACCAACGGCGTTGTGACAACCAATCAGGGCATCCGCATCATCTTCACTGACAGCTCGCGTGCCATCCTTCGTCTCAGCGGCACTGGCAGCAGTGGTGCCACCGTCCGCCTCTACATTGACAGCTACATTTCTGACGCTAGCAAATACGAGGCCGATGCGCAGACTGTGCTGCAGCCGCTGATCAAGACCACCCTTCAGATCTCTCAGCTGCAAGAGTTCCTGCAGCGGGATGCACCCACTGTGATCACATAA___TGGATGCAGACGAAATACAACACCAGCAGTCC

Fln Alignment:

HLKU4M004H8FBS___RYDYEEVTSEGANKMIAHLRSFIADPSSLTSQTFENGYKVATIDDFQYLDPTNGVVTTNQGIRIIFTDSSRAILRLSGTGSSGATVRLYIDSYISDASKYEADAQTVLQPLIKTTLQISQLQEFLQRDAPTVIT
A9NXL7________________RYDYEECELEGANKMVEHLRGLI---SNIKAGEEYGNYTIQFADDFAYTDPVDGSVVFKQGVRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKHDMDAQTALKPLIDVALSISKLKEYTGREKPTVIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain