SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150258

Length: 312 nt

UniGene Fasta

>sp_v3.0_unigene150258
AGGTGATCACGGCCGTGCAGAAGTCGGCGACGGATGCGCGGCGGCATTTGGTGACGGTGCCCATGACGAAGTATCTCACGTTTCCGCACAGAGCCGATGGTGACTACGGGGCTGCTAAGGTGATGCTGAGGCCAGCTGCCACAGGAACAGGAGTGATTGCTGGTGGGTCAGTACGTGTGGTTCTTGAGTTGGCAGGGGTAGAAAATGCTTTGGGTAAGGAGCTGGGAAGTAAGAACCCACTCAACAACGCTAGGGCTGTTATTGAAGCCGTCGGAAAGATGAAACAGTTCAGAGATGTAGCTAGAGACCGTG

Ace file of the UniGene sp_v3.0_unigene150258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	30S ribosomal protein S5, putative n=1 Tax=Ricinus communis RepID=B9RBC3_RICCO	-	-	3.0e-40	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	30S ribosomal protein S5, chloroplastic	-	-	1.586e-31	-

Source	Gene names
Sma3	At2g33800; GSVIVT00003076001; Grc000085; LOC_Os03g34040; MICPUCDRAFT_48160; MICPUN_92603; OSJNBa0037J17.7; OSJNBb0047D08.4; OSTLU_13247; OSTLU_18077; Os03g0452300; OsI_12226; OsJ_11420; PHYPADRAFT_111761; PHYPADRAFT_123576; PHYPADRAFT_126803; POPTRDRAFT_1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S5	IPR000851	-	-
Sma3	Ribosomal protein S5, C-terminal	IPR005324	-	-
Sma3	Ribosomal protein S5, bacterial-type	IPR005712	-	-
Sma3	Ribosomal protein S5, N-terminal	IPR013810	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Ribosomal protein S5, N-terminal, conserved site	IPR018192	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33800.1	Ribosomal protein S5 family protein chr2:14300925-14302352 REVERSE LENGTH=303	75%
RefSeq	Arabidopsis thaliana	NP_180936.1	30S ribosomal protein S5 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002305129.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV88

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 103 - 328

Fln protein: VITAVQKSATDARRHLVTVPMTKYLTFPHRADGDYGAAKVMLRPAATGTGVIAGGSVRVVLELAGVENALGKELGSKNPLNNARAVIEAVGKMKQFRDVARDR

Protein Length: 104

Fln nts: AGGTGATCACGGCCGTGCAGAAGTCGGCGACGGATGCGCGGCGGCATTTGGTGACGGTGCCCATGACGAAGTATCTCACGTTTCCGCACAGAGCCGATGGTGACTACGGGGCTGCTAAGGTGATGCTGAGGCCAGCTGCCACAGGAACAGGAGTGATTGCTGGTGGGTCAGTACGTGTGGTTCTTGAGTTGGCAGGGGTAGAAAATGCTTTGGGTAAGGAGCTGGGAAGTAAGAACCCACTCAACAACGCTAGGGCTGTTATTGAAGCCGTCGGAAAGATGAAACAGTTCAGAGATGTAGCTAGAGACCGTG

Fln Alignment:

HLKU4M004JUTGQ___VITAVQKSATDARRHLVTVPMTKYLTFPHRADGDYGAAKVMLRPAATGTGVIAGGSVRVVLELAGVENALGKELGSKNPLNNARAVIEAVGKMKQFRDVARDR
A9NV88________________VIAAVQKSAVDARRHVVTVPMTKYLTFPHRADGHYGAAKVMLRPATAGTGVIAGGAVRVVLELAGVENALGKQLGSDNPLNNARAVIDAVSQMRQFREVAEYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain