SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150221

Length: 473 nt

UniGene Fasta

>sp_v3.0_unigene150221
GTCTTGGTCAAGAAGGCTGCCATTCCTTACACCAAATACACTGGTGGTATTGGAAGACACGCCATCGCCAAACAATACAAAGCCCCAGGTGACAAGGTTGGATTCCCAGTTAAGGCCACCAAGAGCTTTTTGGATCTCCTTAGAAACCTTGAGTCCAACGCCGAGATTAAAGGATTAGATTCCGAACAAATCACCATCACTCATGCCCAAGCCAACCAAGCCCCACCCATGAGAAGAAGAACATACCGTGCCCATGGTAGAATCAACCCTTACATGGCTTGCCCAGCACACATTGAGCTTATTGGTGAAGAGAAAGGTATCGAGATTGCTAAAGAGAAAGAGGCTCCTGCTAAGTTGAGCAAGAAGCAATCCGCTCAACTCCGTGCAAAAATCCGCTCGTGTGCAGGCTTAATTATCTCCATTCTGTAGCTGATCTGGTGCTGGGAACTAAGATAAGCTCACAAATTTGCTTC

Ace file of the UniGene sp_v3.0_unigene150221

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L17-2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N014_PHYIT	-	-	8.0e-27	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	60S ribosomal protein L17-2	-	-	2.074e-08	-

Source	Gene names
Sma3	At1g27400; At1g67430; B1279D09.8; CHLREDRAFT_77517; F17L21.19; GSVIVT00002839001; GSVIVT00002840001; GSVIVT00017930001; OJ1770_H02.31; OJ1789_C07.10; OSTLU_32234; Os08g0530200; Os09g0258600; OsI_30009; OsI_30588; OsJ_28046; OsJ_28568; Ot06g03260; P0523B07

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	-
Sma3	Peptidase M28	IPR007484	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67430.1	Ribosomal protein L22p/L17e family protein chr1:25262209-25263627 FORWARD LENGTH=175	6.0e-28	53%
RefSeq	Arabidopsis thaliana	NP_176910.1	60S ribosomal protein L17-2 [Arabidopsis thaliana]	8.0e-28	53%
RefSeq	Populus trichocarpa	XP_002314532.1	predicted protein, partial [Populus trichocarpa]	9.0e-30	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYW9

Fln msg: your sequence is shorter than subject: 143 - 183

Fln protein: VLVKKAAIPYTKYTGGIGRHAIAKQYKAPGDKVGFPVKATKSFLDLLRNLESNAEIKGLDSEQITITHAQANQAPPMRRRTYRAHGRINPYMACPAHIELIGEEKGIEIAKEKEAPAKLSKKQSAQLRAKIRSCAGLIISIL*

Protein Length: 144

Fln nts: GTCTTGGTCAAGAAGGCTGCCATTCCTTACACCAAATACACTGGTGGTATTGGAAGACACGCCATCGCCAAACAATACAAAGCCCCAGGTGACAAGGTTGGATTCCCAGTTAAGGCCACCAAGAGCTTTTTGGATCTCCTTAGAAACCTTGAGTCCAACGCCGAGATTAAAGGATTAGATTCCGAACAAATCACCATCACTCATGCCCAAGCCAACCAAGCCCCACCCATGAGAAGAAGAACATACCGTGCCCATGGTAGAATCAACCCTTACATGGCTTGCCCAGCACACATTGAGCTTATTGGTGAAGAGAAAGGTATCGAGATTGCTAAAGAGAAAGAGGCTCCTGCTAAGTTGAGCAAGAAGCAATCCGCTCAACTCCGTGCAAAAATCCGCTCGTGTGCAGGCTTAATTATCTCCATTCTGTAG___CTGATCTGGTGCTGGGAACTAAGATAAGCTCACAAATTTGCTTC

Fln Alignment:

HLKU4M004IPP31___VLVKKAAIPYTKYTGGIGRHAIAKQYKAPGDKVGFPVKATKSFLDLLRNLESNAEIKGLDSEQITITHAQANQAPPMRRRTYRAHGRINPYMACPAH
A9NYW9________________VLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQG-RWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain