SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150214

Length: 175 nt

UniGene Fasta

>sp_v3.0_unigene150214
GCATGCCAGACATCTTGTTGTTAGATGAGCCTCTTGCAGGTCTTGACTGGAAAGCTCGGACAGATGTGGTAAAGTTACTGGAGAATCTGAAGAAAGAAAGAATGTTGATTGTCGTCAGCCATGATTTGAAAGAAATATCTCCACTGGTGGATAAAGCTTGGAGAATGGATATGGG

Ace file of the UniGene sp_v3.0_unigene150214

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 7, ABC component protein PpABCI7 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TQF9_PHYPA	-	-	1.0e-18	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	At5g14100; CHLREDRAFT_115782; GSVIVT00037884001; LOC_Os11g29850; MICPUN_108776; MUA22.10; NAP14; Os11g0490800; OsI_36151; OsI_36152; OsJ_33929; PHYPADRAFT_149024; POPTRDRAFT_597142; RCOM_1447170; ppabci7;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14100.1	ATNAP14, NAP14 non-intrinsic ABC protein 14 chr5:4549706-4551632 REVERSE LENGTH=278	9.0e-23	70%
RefSeq	Arabidopsis thaliana	NP_196914.1	ABC transporter I family member 11 [Arabidopsis thaliana]	1.0e-22	70%
RefSeq	Populus trichocarpa	XP_002328881.1	predicted protein [Populus trichocarpa]	4.0e-24	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEF2

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 57 - 239

Fln protein: MPDILLLDEPLAGLDWKARTDVVKLLENLKKERMLIVVSHDLKEISPLVDKAWRMDM

Protein Length: 58

Fln nts: GCATGCCAGACATCTTGTTGTTAGATGAGCCTCTTGCAGGTCTTGACTGGAAAGCTCGGACAGATGTGGTAAAGTTACTGGAGAATCTGAAGAAAGAAAGAATGTTGATTGTCGTCAGCCATGATTTGAAAGAAATATCTCCACTGGTGGATAAAGCTTGGAGAATGGATATGGG

Fln Alignment:

HLKU4M004JRCH9___MPDILLLDEPLAGLDWKARTDVVKLLENLKKERMLIVVSHDLKEISPLVDKAWRMDM
D5AEF2________________MPDILLLDEPLAGLDWKARTDVVKLLETLKKERMLIVVSHDLKEISPLVDKAWRMDM

SSRs (tot: 1)

Start position	End position	Sequence	Length
90	102	AAGA AAGA AAGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain