SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150161

Length: 460 nt

UniGene Fasta

>sp_v3.0_unigene150161
ATGACCTGACCATCGATGGTCAATCCTTTGTTGGTGCTGGCGAATCAAAAGCGATTGTGGATTCGGGTACCTCTATCCTCACTGGACCATCTGCCGAAGTCAGTAAAATTGCTGCACTCTTGGGTGCCAAGGAGGTCATTGAAGGCGAATATTTCGTCAAATGTGACTATACTCTTCCAAGTATGGTGTTCAAGATCGATGGCAATGACTACACTCTCACCCCTGAGGATTATCTCATTCCTGATGGTGATTTCTGTCTTCTTGGAATGATGGCTTTGGATGTTTCCGAACCAACTGGACCACTCTGGATCCTTGGTGATGTGTTCATGAGAAAGTACTACACGGTCTTTGATGTAGCCAATGAGAGAGTGGGGTTTGCTCTTGCTGCCCATCCTCGTTAAATCTCATCATGCCAAGCTCAAACTCGTAGGAGTTGGAATGAGTGAGTGGAGTATAATTG

Ace file of the UniGene sp_v3.0_unigene150161

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: cathepsin E-A-like n=2 Tax=Xenopus (Silurana) tropicalis RepID=UPI0001DE829A	-	-	1.0e-28	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Aspartic protease	-	-	4.187e-07	-

Source	Gene names
Sma3	AT1G11910; At1g11910; F12F1.24; PHATRDRAFT_16168; PPFRU11; Pra-1; THAPSDRAFT_36297; soyAP5;

Source	GOs	Term	Type	Identity
Sma3	lysosome	GO:0005764	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Saposin-like	IPR011001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11910.1	APA1, ATAPA1 aspartic proteinase A1 chr1:4017119-4019874 REVERSE LENGTH=506	1.0e-19	51%
RefSeq	Arabidopsis thaliana	NP_172655.1	aspartic proteinase A1 [Arabidopsis thaliana]	1.0e-19	51%
RefSeq	Populus trichocarpa	XP_002319454.1	predicted protein [Populus trichocarpa]	3.0e-19	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1V4

Fln msg: your sequence is shorter than subject: 133 - 284

Fln protein: DLTIDGQSFVGAGESKAIVDSGTSILTGPSAEVSKIAALLGAKEVIEGEYFVKCDYTLPSMVFKIDGNDYTLTPEDYLIPDGDFCLLGMMALDVSEPTGPLWILGDVFMRKYYTVFDVANERVGFALAAHPR*

Protein Length: 134

Fln nts: ATGACCTGACCATCGATGGTCAATCCTTTGTTGGTGCTGGCGAATCAAAAGCGATTGTGGATTCGGGTACCTCTATCCTCACTGGACCATCTGCCGAAGTCAGTAAAATTGCTGCACTCTTGGGTGCCAAGGAGGTCATTGAAGGCGAATATTTCGTCAAATGTGACTATACTCTTCCAAGTATGGTGTTCAAGATCGATGGCAATGACTACACTCTCACCCCTGAGGATTATCTCATTCCTGATGGTGATTTCTGTCTTCTTGGAATGATGGCTTTGGATGTTTCCGAACCAACTGGACCACTCTGGATCCTTGGTGATGTGTTCATGAGAAAGTACTACACGGTCTTTGATGTAGCCAATGAGAGAGTGGGGTTTGCTCTTGCTGCCCATCCTCGTTAA___ATCTCATCATGCCAAGCTCAAACTCGTAGGAGTTGGAATGAGTGAGTGGAGTATAATTG

Fln Alignment:

HLKU4M004JFATL___GEYFVKCDY--TLPSMVFKIDGNDYTLTPEDYLIPDGDF----CLLGMMALDVSEPTGPLWILGDVFMRKYYTVFDVANERVGFALA
A9P1V4________________GESVVDCDQVSSMPTVSFSIGNKTFSLTPDQYILQVGEGSVAQCVSGFMGLDVSPPLGPIWILGDIFMGVYHTVFDYGNSRVGFAEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain