SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150065

Length: 268 nt

UniGene Fasta

>sp_v3.0_unigene150065
TCCTAAAAGTATGTTTTGTGTTTTTCTTCTAACATTTTTCTAGCAAGAACATAGTTAGAGACATTATCTGTGACGATTTGAACAACATTAGCCACCCCCACTCTTCAAAAACCTCATCCAAAAGTTGAAACAACAAGTGTGCATCTTTCACCTTATCAAATGCATCAATTGATTTTAGAAACATGGTTCACTGTAGGCAAAAGATAAGAAAGTTTATGATGGTATGGTTCCTTTGATCAGTCCATCCATCTGACACAATGGTACATCC

Ace file of the UniGene sp_v3.0_unigene150065

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	3.0e-17	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	VITISV_007207; VITISV_011329; VITISV_013263; VITISV_014304; VITISV_026476; VITISV_026921; VITISV_043989;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002307433.1	predicted protein [Populus trichocarpa]	2.0e-17	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB70

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 36 - 93

Fln protein: NNKCASFTLSNASIDFRNMVHCRQKIRKFMMVWFL*

Protein Length: 37

Fln nts: TCCTAAAAGTATGTTTTGTGTTTTTCTTCTAACATTTTTCTAGCAAGAACATAGTTAGAGACATTATCTGTGACGATTTGAACAACATTAGCCACCCCCACTCTTCAAAAACCTCATCCAAAAGTTGAAACAACAAGTGTGCATCTTTCACCTTATCAAATGCATCAATTGATTTTAGAAACATGGTTCACTGTAGGCAAAAGATAAGAAAGTTTATGATGGTATGGTTCCTTTGATCAGTCCATCCATCTGACACAATGGTACATCC

Fln Alignment:

HLKU4M002EWHLC___ASFTLSNASIDFRNMVHCRQKIRKFMMVWFL*SVHPSDTMVH
D5AB70________________ASLTLSDASTDLKNMVPCGQETRKFMIVRFFPSLHPSDMMVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain