SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene150004

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene150004
CACTTGTACAGCACAGGCCAAATCTGATCCCAATCAAAACACTGGATTTTCTTTTCAGAAATGTAGGGTTGATGGAACCCATGAATTCTTATCCTCGTCCAAAAACTTTACTACATACCTGGGGAGACCTTTGAAGCAATACTCATGCACAGTTTTCATCCATTCATATCTTACCAGAGTAGTGGACCCTGCTGGATGGCTCGCAACCAA

Ace file of the UniGene sp_v3.0_unigene150004

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=2 Tax=Selaginella moellendorffii RepID=D8T5K6_SELML	-	-	4.0e-17	61%
FL-Next	sp=Pectinesterase; Taiwania cryptomerioides.	-	-	0.0	53%
Sma3	Pectinesterase	-	-	6.97e-06	-

Source	Gene names
Sma3	B1011A07.22; Os01g0312500; OsI_01594; OsJ_01485;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02330.1	ATPMEPCRB Plant invertase/pectin methylesterase inhibitor superfamily chr4:1032479-1034928 FORWARD LENGTH=573	2.0e-17	51%
RefSeq	Arabidopsis thaliana	NP_567227.1	pectinesterase 41 [Arabidopsis thaliana]	2.0e-17	51%
RefSeq	Populus trichocarpa	XP_002330223.1	predicted protein [Populus trichocarpa]	1.0e-18	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B0L3S3

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 69 - 595

Fln protein: TCTAQAKSDPNQNTGFSFQKCRVDGTHEFLSSSKNFTTYLGRPLKQYSCTVFIHSYLTRVVDPAGWLAT

Protein Length: 70

Fln nts: CACTTGTACAGCACAGGCCAAATCTGATCCCAATCAAAACACTGGATTTTCTTTTCAGAAATGTAGGGTTGATGGAACCCATGAATTCTTATCCTCGTCCAAAAACTTTACTACATACCTGGGGAGACCTTTGAAGCAATACTCATGCACAGTTTTCATCCATTCATATCTTACCAGAGTAGTGGACCCTGCTGGATGGCTCGCAACCAA

Fln Alignment:

HLKU4M002DC6KD___TAQAKSDPNQNTGFSFQKCRVDGTHEFLSSSKNFTTYLGRPLKQYSCTVFIHSYLTRVVDPAGWL
B0L3S3________________TAQGRQDPNQNTGISIHNCRVTADSDMAAVKSSFKTYLGRPWKEYSRTVFLQSYLDDLIHPAGWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain