SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149866

Length: 309 nt

UniGene Fasta

>sp_v3.0_unigene149866
AGCAGCAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGTCGGTTTGTTAAGGACAAGAAACTGGAAGCCGGCGACATTGTGTCGTTTTACAGAGGATCAAGTCAGCCTCACCAGCTCTACATCAATTGGAGACGCAGGCCGGCCGTTCAGCCCTGGCTCGGAGTAGATTCCCTGCCATACCCATCCAAGGGAGCAAGGATGTATCCCGTGAAGGGATCGTCTTCCCTGAATCCTTTCAATTCCGGAACCCGCGCCGCCGTTGTTTACAATGCCCAATGGATGCCCATATTCTGCCCAGTTAAGCAATTT

Ace file of the UniGene sp_v3.0_unigene149866

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B3 domain-containing transcription factor NGA2 n=3 Tax=Arabidopsis RepID=NGA2_ARATH	-	-	1.0e-13	73%
FL-Next	sp=B3 domain-containing transcription factor NGA2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%

Source	Gene names
Sma3	ARF32; At1g01030; At1g13260; At1g25560; At1g68840; At2g46870; At3g11580; At3g61970; At5g06250; F14K14.5; F19D11.25; F21F14.140; F24K9.25; F2J7.3; GSVIVT00000473001; GSVIVT00021555001; GSVIVT00026190001; GSVIVT00030292001; H0303A11-B0406H05.5; LOC_Os03g029

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61970.1	NGA2 AP2/B3-like transcriptional factor family protein chr3:22951829-22952728 FORWARD LENGTH=299	8.0e-19	73%
RefSeq	Arabidopsis thaliana	NP_191756.1	B3 domain-containing transcription factor NGA2 [Arabidopsis thaliana]	1.0e-18	73%
RefSeq	Populus trichocarpa	XP_002315958.1	AP2 domain-containing transcription factor [Populus trichocarpa]	1.0e-14	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M268

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 103 - 299

Fln protein: SSSQSYVLTKGWSRFVKDKKLEAGDIVSFYRGSSQPHQLYINWRRRPAVQPWLGVDSLPYPSKGARMYPVKGSSSLNPFNSGTRAAVVYNAQWMPIFCPVKQF

Protein Length: 104

Fln nts: AGCAGCAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGTCGGTTTGTTAAGGACAAGAAACTGGAAGCCGGCGACATTGTGTCGTTTTACAGAGGATCAAGTCAGCCTCACCAGCTCTACATCAATTGGAGACGCAGGCCGGCCGTTCAGCCCTGGCTCGGAGTAGATTCCCTGCCATACCCATCCAAGGGAGCAAGGATGTATCCCGTGAAGGGATCGTCTTCCCTGAATCCTTTCAATTCCGGAACCCGCGCCGCCGTTGTTTACAATGCCCAATGGATGCCCATATTCTGCCCAGTTAAGCAATTT

Fln Alignment:

HLKU4M002ESZ7M___SSSQSYVLTKGWSRFVKDKKLEAGDIVSFYRGSSQPHQLYINWRRRPAV
Q9M268________________NSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRRPKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain