SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149812

Length: 434 nt

UniGene Fasta

>sp_v3.0_unigene149812
AAGAAATGTGCATTACTTGCATCCATGCAGAGAATATGGGTTGAGTATTTCAGAGGCATTAGTAATGGGAAGGTCTGCAACTAGTCGTATTGTAACGTGCTTTAACATTTTGCTGGCATTATTGTGTCTATCCAAATTAGGTTATTCAGTGCAGGCGAATCCCAGCAAACCGCAATATTAATATCAAGTTTGGTGAGTTAGGGAACAACAATGGATTGGAGACTCGACTGTGGACCCTGGGAAGTTGGAGACTCGACTGTGGATCCTGGGAACAACAATGGACTTGAAACGATTTTCAGGGCCAACTTTCCTCCATGTGGGAGAGATTTCGGGGATCATAAACCCAGTAGACGATTTACCAACGGAAAATTAGTAACAGATATGATATGTATGACTCCGAGTAGAACTAATTAGTGATCTAAAGAATACAAAAT

Ace file of the UniGene sp_v3.0_unigene149812

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S950_RICCO	-	-	7.0e-12	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Zinc finger protein, putative	-	-	1.109e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	8.937e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	8.937e-08	%
Sma3	Bisphenol degradation	00363	8.937e-08	%
Sma3	Glycerophospholipid metabolism	00564	8.937e-08	%
Sma3	Toluene degradation	00623	8.937e-08	%
Sma3	Aminobenzoate degradation	00627	8.937e-08	%
Sma3	Retinol metabolism	00830	8.937e-08	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	8.937e-08	%

Source	Gene names
Sma3	APG; At3g16370; At5g22810; At5g45960; B1370C05.17; GSVIVT00021723001; GSVIVT00022108001; GSVIVT00034270001; K15I22.16; MRN17.4; MYA6.18; OJ1435_F07.7; OsI_05454; OsJ_04991; POPTRDRAFT_171852; POPTRDRAFT_804040; POPTRDRAFT_867028; RCOM_0840120; RCOM_101262

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	lipase activity	GO:0016298	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45960.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr5:18637174-18640319 REVERSE LENGTH=375	2.0e-14	63%
RefSeq	Arabidopsis thaliana	NP_199408.1	GDSL esterase/lipase [Arabidopsis thaliana]	2.0e-14	63%
RefSeq	Populus trichocarpa	XP_002308267.1	predicted protein [Populus trichocarpa]	5.0e-15	67%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLX0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 254 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 359

Fln protein: MDWRLDCGPWEVGDSTVDPGNNNGLETIFRANFPPCGRDFGDHKPSRRFTNGKLVTDMICMTPSRTN*

Protein Length: 69

Fln nts: AAGAAATGTGCATTACTTGCATCCATGCAGAGAATATGGGTTGAGTATTTCAGAGGCATTAGTAATGGGAAGGTCTGCAACTAGTCGTATTGTAACGTGCTTTAACATTTTGCTGGCATTATTGTGTCTATCCAAATTAGGTTATTCAGTGCAGGCGAATCCCAGCAAACCGCAATATTAATATCAAGTTTGGTGAGTTAGGGAACAACA_-_ATGGATTGGAGACTCGACTGTGGACCCTGGGAAGTTGGAGACTCGACTGTGGATCCTGGGAACAACAATGGACTTGAAACGATTTTCAGGGCCAACTTTCCTCCATGTGGGAGAGATTTCGGGGATCATAAACCCAGTAGACGATTTACCAACGGAAAATTAGTAACAGATATGATATGTATGACTCCGAGTAGAACTAATTAGTGATCTAAAGAATACAAAAT

Fln Alignment:

HLKU4M002EAARV___GDSTVDPGNNNGLETIFRANFPPCGRDFGDHKPSRRFTNGKLVTDMI
A9NLX0________________GDSTVDPGNNNGLETIAKANFPPYGRDFIGRKPSGRFTNGKLVTDII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain