SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149798

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene149798
CTCGTCGCGCCGAGGCGAGGAGGAAGACCAGGCGCTCACTTGGGCTGCCCTTGAGAAGCTCCCCACTTACGATCGAGTTCGGAGGGGCATTATTCATAATGTTCTGGGTGAGCAAAGTGAGGTGGATGTCACCAATCTTAGCTTCCATGACCGCCAGCTATTGCTCGACAGGCTCTTCAATATGGCCGACGACAATTCTGAGCAGTTTTTGTTCAAGATGAGGGAGCGAATCGACAAGTAAGTTGTTACAGACAGTGGATCTGTTAAGCTTTTGAGTTTGAGTTTAATGGTAGGTTGTAA

Ace file of the UniGene sp_v3.0_unigene149798 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9RGL9_RICCO	-	-	3.0e-17	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Sma3	Probable pleiotropic drug resistance protein 1	-	-	9.26e-06	-

Source	Gene names
Sma3	LOC_Os01g42350; Os01g0609000; OsI_02806; OsJ_02558; P0410E03.5; PDR1; PDR10;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15520.1	PDR12, ATPDR12, ABCG40, ATABCG40 pleiotropic drug resistance 12 chr1:5331993-5338175 REVERSE LENGTH=1423	8.0e-18	46%
RefSeq	Arabidopsis thaliana	NP_173005.1	ABC transporter G family member 40 [Arabidopsis thaliana]	1.0e-17	46%
RefSeq	Populus trichocarpa	XP_002298123.1	pleiotropic drug resistance, ABC transporter family protein, partial [Populus trichocarpa]	3.0e-21	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 312 aas, your sequence is shorter than subject: 80 - 443

Fln protein: SSRRGEEEDQALTWAALEKLPTYDRVRRGIIHNVLGEQSEVDVTNLSFHDRQLLLDRLFNMADDNSEQFLFKMRERIDK*

Protein Length: 81

Fln nts: CTCGTCGCGCCGAGGCGAGGAGGAAGACCAGGCGCTCACTTGGGCTGCCCTTGAGAAGCTCCCCACTTACGATCGAGTTCGGAGGGGCATTATTCATAATGTTCTGGGTGAGCAAAGTGAGGTGGATGTCACCAATCTTAGCTTCCATGACCGCCAGCTATTGCTCGACAGGCTCTTCAATATGGCCGACGACAATTCTGAGCAGTTTTTGTTCAAGATGAGGGAGCGAATCGACAAGTAAGTTGTTACAGACAGTGGATCTGTTAAGCTTTTGAGTTTGAGTTTAATGGTAGGTTGTAA

Fln Alignment:

HLKU4M002DE2UL___SRRGEEEDQALTWAALEKLPTYDRVRRGIIHNVLGEQ------SEVDVTNLSFHDRQLLLDRLFNMADDNSEQFLFKMRERID
B8LN70________________ARRCEEE--ALAWAAIERLPTYERLRTSILNDLVNNQPIGSPHNQIDVTNIPPEARKQLIDRLLGVTDQDNERFLLKLRQRLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain