SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149777

Length: 385 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene149777
TAATATCAAGGAAGTGGCTGGAGATTCGAATGTGCCAGTTGTCAAAAATTATACTGTAAATGTTACTCAAAACTTTCTTGAGGTGCACGTTTTTATGGGCTGGAAAGGGAACCTGTTGCGTACCATCACCACAGACACATGGACCGTTAGTCTCAGCAATTAGGGTCATTCCTGAGTTTAAACCAACCATTGTAAACAGAAGTTCCAACAACGGCAGTAGAACCAAAATTATTGGTATTGTTCTTGGAGTACTAATTGGTTTAGGGTTTGTTCTCTGCTCATCCTGTATGCTTTTAAAAAGAAAACGAAGGAAGGACAAATCATTGACAGCTGATGATGACGAAGTTTTAATGGGTATTCCTGGAAGACCCAATACTTTCAGTTT

Ace file of the UniGene sp_v3.0_unigene149777 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Arabidopsis thaliana]	-	-	1.0e-08	36%
FL-Next	sp=Probable LRR receptor-like serine/threonine-protein kinase At1g56130; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: C0LGH2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 344 aas, your sequence is shorter than subject: 127 - 1032

Fln protein: ISRKWLEIRMCQLSKIIL*MLLKTFLRCTFLWAGKGTCCVPSPQTHGPLVSAIRVIPEFKPTIVNRSSNNGSRTKIIGIVLGVLIGLGFVLCSSCMLLKRKRRKDKSLTADDDEVLMGIPGRPNTFS

Protein Length: 128

Fln nts: TAATATCAAGGAAGTGGCTGGAGATTCGAATGTGCCAGTTGTCAAAAATTATACTGTAAATGTTACTCAAAACTTTCTTGAGGTGCACGTTTTTATGGGCTGGAAAGGGAACCTGTTGCGTACCATCACCACAGACACATGGACCGTTAGTCTCAGCAATTAGGGTCATTCCTGAGTTTAAACCAACCATTGTAAACAGAAGTTCCAACAACGGCAGTAGAACCAAAATTATTGGTATTGTTCTTGGAGTACTAATTGGTTTAGGGTTTGTTCTCTGCTCATCCTGTATGCTTTTAAAAAGAAAACGAAGGAAGGACAAATCATTGACAGCTGATGATGACGAAGTTTTAATGGGTATTCCTGGAAGACCCAATACTTTCAGTTT

Fln Alignment:

HLKU4M002C6MH7___LRCTFLWAGKGTCCVPSPQTHGPLVSAIRVIPEFKPTIVNRSSNNG
C0LGH2________________LEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKPPSKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain