SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149755

Length: 174 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene149755
CATCTCTGTTGACCGAGAAGATTGGAAACTCGACACTTTAATCGATTTATATGATACGATTAATATCACTCAATGCGTAATTTTCTGTAACAGTAAACGAAAGGTTGACTGGCTCACTGCTAAATTGACCGAAAAAGAATTCACTGTCTCTTCCACTCACGGTGAAATCTCTCA

Ace file of the UniGene sp_v3.0_unigene149755 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase eIF4A n=2 Tax=Ustilaginaceae RepID=IF4A_USTMA	-	-	3.0e-17	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	DEAD-box ATP-dependent RNA helicase 2	-	-	2.486e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	2.525e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.525e-08	%
Sma3	Lipopolysaccharide biosynthesis	00540	2.525e-08	%
Sma3	Folate biosynthesis	00790	2.525e-08	%
Sma3	Metabolic pathways	01100	2.525e-08	%

Source	Gene names
Sma3	At3g19760; CHLREDRAFT_188942; CHLREDRAFT_608; EIF4A3; GSVIVT00037338001; LOC_Os01g45190; LOC_Os02g05330; LOC_Os03g36930; MICPUCDRAFT_31183; MICPUCDRAFT_49549; MICPUN_106753; MICPUN_97077; MMB12.25; MMB12.4; MtrDRAFT_AC174465g13v2; OJ1008_C03.10; OSJNBa002

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19760.1	EIF4A-III eukaryotic initiation factor 4A-III chr3:6863790-6866242 FORWARD LENGTH=408	1.0e-19	60%
RefSeq	Arabidopsis thaliana	NP_188610.1	DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]	2.0e-19	60%
RefSeq	Populus trichocarpa	XP_002306390.1	predicted protein, partial [Populus trichocarpa]	4.0e-22	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUU4

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 57 - 408

Fln protein: ISVDREDWKLDTLIDLYDTINITQCVIFCNSKRKVDWLTAKLTEKEFTVSSTHGEIS

Protein Length: 58

Fln nts: CATCTCTGTTGACCGAGAAGATTGGAAACTCGACACTTTAATCGATTTATATGATACGATTAATATCACTCAATGCGTAATTTTCTGTAACAGTAAACGAAAGGTTGACTGGCTCACTGCTAAATTGACCGAAAAAGAATTCACTGTCTCTTCCACTCACGGTGAAATCTCTCA

Fln Alignment:

HLKU4M002ETB6P___ISVDREDWKLDTLIDLYDTINITQCVIFCNSKRKVDWLTAKLTEKEFTVSSTHGEI
A9NUU4________________VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain