SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149754

Length: 377 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene149754
GGGAGATTACCGGGTCGGACAGACAACGAGATAAAGAACCACTGGAGTACACACATCAAGAGAAAATTGTTGAGTAGAGGACTTGATACGCAGACCCATTGCTCCGTATGCCCGCCTCACAACAGCAGCACTGCCCTCAACTCTCCACCCGCTCCCGAGCACAACATTCCGGCGTTCCAGAGCAGAAGGGCAGAGATAGCAGACTTCTTCCAACTCGAACATTCGAAAAGCTCGCCGATCGAGTCAGCAGCTTCTACAGATGCAGACAATCCCCATCCCGGCCTTAATCTTGATTTGTGTATGGGCTTGCCCTCTTATTCTGCCCCCACCTGACTTAGTGGCACTTGCAGTGAATGTAAGAAGACTATTTAATTGAC

Ace file of the UniGene sp_v3.0_unigene149754 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS	-	-	1.0e-31	65%
FL-Next	tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	64%
Sma3	MYB transcription factor	-	-	3.724e-08	-

Source	Gene names
Sma3	AT4g12350; At1g22640; At1g35515; At2g16720; At4g12350; At5g54230; At5g54230/MDK4.5; F12K8.1; GSVIVT00036753001; MYB092; MYB093; MYB150; MYB168; MYB179; MYB180; MYB3; MYB42; MYB49; MYB79; MYB8; Myb14; Myb47; Myb5; Os02g0732600; OsI_08821; OsJ_08275; Osmyb2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	cinnamic acid biosynthetic process	GO:0009800	Biological Process	-
Sma3	negative regulation of metabolic process	GO:0009892	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A5JYE9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 39 aas, your sequence is shorter than subject: 111 - 257

Fln protein: GRLPGRTDNEIKNHWSTHIKRKLLSRGLDTQTHCSVCPPHNSSTALNSPPAPEHNIPAFQSRRAEIADFFQLEHSKSSPIESAASTDADNPHPGLNLDLCMGLPSYSAPT*

Protein Length: 112

Fln nts: GGGAGATTACCGGGTCGGACAGACAACGAGATAAAGAACCACTGGAGTACACACATCAAGAGAAAATTGTTGAGTAGAGGACTTGATACGCAGACCCATTGCTCCGTATGCCCGCCTCACAACAGCAGCACTGCCCTCAACTCTCCACCCGCTCCCGAGCACAACATTCCGGCGTTCCAGAGCAGAAGGGCAGAGATAGCAGACTTCTTCCAACTCGAACATTCGAAAAGCTCGCCGATCGAGTCAGCAGCTTCTACAGATGCAGACAATCCCCATCCCGGCCTTAATCTTGATTTGTGTATGGGCTTGCCCTCTTATTCTGCCCCCACCTGACTTAGTGGCACTTGCAGTGAATGTAAGAAGACTATTTAATTGAC

Fln Alignment:

HLKU4M002EBFHV___GRLPGRTDNEIKNHWSTHIKRKLLSRGLDTQTHCSVCPPHNSSTALNSPPAPEHNIPAFQS-RRAEIADFFQLEHSKSSPIESAASTDADNPHPGLNLDLCMGLPSYSAP
A5JYE9________________GRLPGRTDNEIKNYWNTHIKRKLLNKGLDPQSHRPLGQVHSSNTTCSSLPAPEHEILAFQSPRTPEIADFFQYERSESSPIEPAASKDEE--YPDLNLELCISLPVHSAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain