SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149692

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene149692
CACTGGACAGGAGCGGCAAAACAGCCTTGCATTCCGAGCTTCCATTTGATTTTCAATTCAGCTACACAGAGACTCCCAAGTTTGTTCCACTGGGCTTCCGGGAGCCGAAGTTTTCTCCTTTTGGCCCCGGCAGGCTGGATAGAGAATGGACCGGCTGGTCCG

Ace file of the UniGene sp_v3.0_unigene149692

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	0.0	69%
Sma3	CRS2-associated factor 2, mitochondrial	-	-	2.258e-09	-

Source	Gene names
Sma3	At4g31010; At5g54890; F6I18.80; GSVIVT00026315001; GSVIVT00027343001; LOC_Os08g07790; LOC_Os08g08860; MBG8.16; OJ1134_B10.1; OSJNBa0054L03.32; Os08g0174900; Os08g0188000; OsI_28005; OsI_28075; OsJ_26288; P0020B10.28; POPTRDRAFT_1098089; RCOM_1613000;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31010.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein chr4:15106708-15108446 FORWARD LENGTH=405	7.0e-17	68%
RefSeq	Arabidopsis thaliana	NP_974645.1	CRS2-associated factor 1 [Arabidopsis thaliana]	5.0e-17	68%
RefSeq	Populus trichocarpa	XP_002320749.1	predicted protein [Populus trichocarpa]	6.0e-17	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Z4U2

Fln msg: Distance to subject end: 311 aas, your sequence is shorter than subject: 53 - 428

Fln protein: LDRSGKTALHSELPFDFQFSYTETPKFVPLGFREPKFSPFGPGRLDREWTGWS

Protein Length: 54

Fln nts: CACTGGACAGGAGCGGCAAAACAGCCTTGCATTCCGAGCTTCCATTTGATTTTCAATTCAGCTACACAGAGACTCCCAAGTTTGTTCCACTGGGCTTCCGGGAGCCGAAGTTTTCTCCTTTTGGCCCCGGCAGGCTGGATAGAGAATGGACCGGCTGGTCCG

Fln Alignment:

HLKU4M002EE1XU___LDRSGKTALHSELPFDFQFSYTET-PKFVPLGFREPKFSPFGPGRLDREWTG
Q6Z4U2________________LDRGGRPAARSDLPFDFRFSYTESSPGDKPIGLREPKYSPFGPGRLDRPWTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain