SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149685

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene149685
CAAAGCCTCCTCCCATAGGACCCAAGCGCGGTACCAAGGTCCCCCAAGATCTTGAGACGGGAATCGTACTGGTATAATGGCATTGGCTCAGTGGTCGCAGTTGATCAGGATCCTCAATCCCGATACCCTGTGGTTGTTAGATTTGACAAGTAAACTATGCAAATGTCTCAACAAACAACTATGCACTTGATGAACTTGTGGAAGTTAAGTAGATTCATGA

Ace file of the UniGene sp_v3.0_unigene149685

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem I reaction center subunit iv b (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFK2_CAMSI	-	-	2.0e-15	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Photosystem I reaction center subunit IV A	-	-	5.415e-12	-

Source	Gene names
Sma3	AT4g28750/F16A16_140; At2g20260; At4g28750; F11A3.19; F16A16.140; Heak293_Cp149; Os07g0435300; OsI_25804; OsJ_24033; P0673E01.25; PHYPADRAFT_133111; PHYPADRAFT_39042; PHYPADRAFT_39045; POPTRDRAFT_711610; PSAE; PSAE-1; PSAE-2; PSAE1; PSAE2; PSAEA; PSAEB; R

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	photosystem I reaction center	GO:0009538	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaE, reaction centre subunit IV	IPR003375	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20260.1	PSAE-2 photosystem I subunit E-2 chr2:8736780-8737644 FORWARD LENGTH=145	4.0e-14	80%
RefSeq	Arabidopsis thaliana	NP_179616.1	photosystem I reaction center subunit IV B [Arabidopsis thaliana]	5.0e-14	80%
RefSeq	Populus trichocarpa	XP_002301832.1	hypothetical protein POPTRDRAFT_711610 [Populus trichocarpa]	4.0e-16	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ55

Fln msg: warning!, putative chimeric sequence! or repetitive structure your sequence is shorter than subject: 70 - 143

Fln protein: KPPPIGPKRGTKVPQDLETGIVLV*WHWLSGRS*SGSSIPIPCGC*I*QVNYANVSTNNYALDELVEVK*

Protein Length: 71

Fln nts: CAAAGCCTCCTCCCATAGGACCCAAGCGCGGTACCAAGGTCCCCCAAGATCTTGAGACGGGAATCGTACTGGTATAATGGCATTGGCTCAGTGGTCGCAGTTGATCAGGATCCTCAATCCCGATACCCTGTGGTTGTTAGATTTGACAAGTAAACTATGCAAATGTCTCAACAAACAACTATGCACTTGATGAACTTGTGGAAGTTAAGTAG___ATTCATGA

Fln Alignment:

HLKU4M002C2ERA___KPPPIGPKRGTKVPQDLETGIVLV*WHWLSG-----RXXXXXXXXXXXXXXXXQVNYANVSTNNYALDELVEVK
C0PQ55________________KPPPIGPKRGTKVK------ILRRESYWYNGVGSVVAVDQDPASRYPVVVRFDKVNYANVSTNNYSLDEILEVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain