SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149627

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene149627
TTGGCAAGTCTGGGACGGTGGGACTGGGTGTCGGGGCCGGCGGGCATATGACTGCCGCGCAGAGGATGATGGCGAGAATGGGGTGGAAGGAGGGCCAGGGTTTGGGCAAGCAGGAGCAGGGGATCACCACGCCTCTCATGGCCAAGAAGACCGATAAGAGGGTAGTCCATGCAACCTTCTATGATGAAGAGAAGTTTAATAGAAATGAATTGGCACCTGCACCAGGGGAGATACCAGGCTACCCTCAGTTTGACAAATAATGAATGG

Ace file of the UniGene sp_v3.0_unigene149627

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO	-	-	2.0e-06	85%
FL-Next	sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Sma3	Splicing factor 45	-	-	2.9e-09	-

Source	Gene names
Sma3	At1g30480; B1074C08.8; B1147B04.17; DRT111; F26G16.10; GSVIVT00028417001; Os01g0526100; OsI_02243; PHYPADRAFT_171219; POPTRDRAFT_235093; POPTRDRAFT_581831; POPTRDRAFT_588062; POPTRDRAFT_640294; POPTRDRAFT_680821; POPTRDRAFT_765460; POPTRDRAFT_794963; POPT

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	G-patch domain	IPR000467	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif domain, eukaryote	IPR003954	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Splicing factor, SPF45	IPR016967	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42698

Fln msg: your sequence is shorter than subject: 86 - 387

Fln protein: GKSGTVGLGVGAGGHMTAAQRMMARMGWKEGQGLGKQEQGITTPLMAKKTDKRVVHATFYDEEKFNRNELAPAPGEIPGYPQFDK*

Protein Length: 87

Fln nts: TTGGCAAGTCTGGGACGGTGGGACTGGGTGTCGGGGCCGGCGGGCATATGACTGCCGCGCAGAGGATGATGGCGAGAATGGGGTGGAAGGAGGGCCAGGGTTTGGGCAAGCAGGAGCAGGGGATCACCACGCCTCTCATGGCCAAGAAGACCGATAAGAGGGTAGTCCATGCAACCTTCTATGATGAAGAGAAGTTTAATAGAAATGAATTGGCACCTGCACCAGGGGAGATACCAGGCTACCCTCAGTTTGACAAATAA___TGAATGG

Fln Alignment:

HLKU4M002DLNWZ___RVVHATFYDEEKFNRNELAPAPGEIPGY
P42698________________RTVRATFYDEEKFSKNELAPVPGEIPGY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain