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UniGene Name: sp_v3.0_unigene149606
Length: 138 nt
 UniGene Fasta
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| >sp_v3.0_unigene149606
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Ace file of the UniGene sp_v3.0_unigene149606
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | carotenoid isomerase [Arabidopsis thaliana] sp|Q9M9Y8.2|CRTSO_ARATH RecName: Full=Carotenoid isomerase, chloroplastic; Short=CrtISO; AltName: Full=Carotenoid and chloroplast regulation protein 2; Flags: Precursor gb|AEE28042.1| carotenoid isomerase [Arabi | - | - | 3.0e-12 | 77% |
| FL-Next | sp=Prolycopene isomerase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 77% |
| Sma3 | CrtISO | - | - | 3.752e-13 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | EC:5.-.-.- | - | 3.752e-12 | - |
| Source | Gene names |
|---|---|
| Sma3 | At1g06820; CCR2; CRTISO; CRTISO1; F4H5.10; GSVIVT00027139001; LOC_Os11g36440; OsI_36549; OsJ_34321; POPTRDRAFT_866125; POPTRDRAFT_904781; RCOM_0422660; crtiso; |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
| Sma3 | electron carrier activity | GO:0009055 | Molecular Function | 0.0 | - |
| Sma3 | oxidoreductase activity | GO:0016491 | Molecular Function | 0.0 | - |
| Sma3 | isomerase activity | GO:0016853 | Molecular Function | 0.0 | - |
| Sma3 | carotenoid isomerase activity | GO:0046608 | Molecular Function | 0.0 | - |
| Sma3 | flavin adenine dinucleotide binding | GO:0050660 | Molecular Function | 0.0 | - |
| Sma3 | tRNA processing | GO:0008033 | Biological Process | 0.0 | - |
| Sma3 | etioplast organization | GO:0009662 | Biological Process | 0.0 | - |
| Sma3 | carotenoid biosynthetic process | GO:0016117 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | DNA-binding protein Dps | IPR002177 | - | 0.0 | - |
| Sma3 | Glucose-inhibited division protein A-related | IPR002218 | - | 0.0 | - |
| Sma3 | Aromatic-ring hydroxylase-like | IPR003042 | - | 0.0 | - |
| Sma3 | Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal | IPR003953 | - | 0.0 | - |
| Sma3 | FAD dependent oxidoreductase | IPR006076 | - | 0.0 | - |
| Sma3 | Carotene isomerase | IPR014101 | - | 0.0 | - |
| Sma3 | Chaperonin Cpn60, conserved site | IPR018370 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G06820.1 | CRTISO, CCR2 carotenoid isomerase chr1:2093145-2096220 REVERSE LENGTH=595 | 2.0e-14 | 77% |
| RefSeq | Arabidopsis thaliana | NP_172167.2 | carotenoid isomerase [Arabidopsis thaliana] | 2.0e-14 | 77% |
| RefSeq | Populus trichocarpa | XP_002323362.1 | predicted protein [Populus trichocarpa] | 3.0e-15 | 80% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q9M9Y8
Fln msg: Overlapping hits, possible frame ERROR between 95 and 73, Distance to subject end: 316 aas, your sequence is shorter than subject: 46 - 595
Fln protein:
P
Protein Length:
47
Fln nts:
A
Fln Alignment:
HIF1XHV02DM3MP___PLECLTLAYYLPQNAGDIARKYIxxxxxxxxIDAECFIVSTVNAL
Q9M9Y8________________PLECLTLAYYLPQNAGAIARKYIxxxxxxxxIDAECFIVSTVNAL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
