SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149581

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene149581
AGGAGATCATTGCCCAATGCAAGGATCATGGTCCACCAGCCCTCTGGAGGGGCCAGTGGGCAGGCGAGTGACATAGCCATTCAGGCCAAGGAAATCTTACTGACCAGGGATAGACTTAACAGTCTTTATGCCAAGCACACTGGGCAGAGCATTGAGAAGATTGAGAAATGCATGGAGAGGGACATGTTCATGTCG

Ace file of the UniGene sp_v3.0_unigene149581

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NSF5_PICSI	-	-	2.0e-28	96%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Endopeptidase Clp.	EC:3.4.21.92	-	8.193e-14	-

Source	Gene names
Sma3	At1g02560; At5g23140; CHLREDRAFT_196557; CHLREDRAFT_55336; CLP1; CLPP2; CLPP5; ClpP2a; ClpP4; GSVIVT00028120001; MICPUCDRAFT_55668; MICPUN_112702; MYJ24.13; NCLPP1; NCLPP5; NCLPP7; OJ1643_A10.30; OSIGBa0153E02-OSIGBa0093I20.20; OSJNBa0038O10.7; OSTLU_1538

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast thylakoid	GO:0009534	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase S14, ClpP	IPR001907	-	-
Sma3	Trigger factor, C-terminal, bacterial	IPR008880	-	-
Sma3	Acute myeloid leukemia 1 (AML 1)/Runt	IPR013524	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S14, ClpP, active site	IPR018215	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23140.1	CLPP2, NCLPP7 nuclear-encoded CLP protease P7 chr5:7783811-7784826 FORWARD LENGTH=241	1.0e-20	58%
RefSeq	Arabidopsis thaliana	NP_568427.1	ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis thaliana]	2.0e-20	58%
RefSeq	Populus trichocarpa	XP_002310077.1	predicted protein [Populus trichocarpa]	8.0e-21	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSF5

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 65 - 243

Fln protein: RRSLPNARIMVHQPSGGASGQASDIAIQAKEILLTRDRLNSLYAKHTGQSIEKIEKCMERDMFMS

Protein Length: 66

Fln nts: AGGAGATCATTGCCCAATGCAAGGATCATGGTCCACCAGCCCTCTGGAGGGGCCAGTGGGCAGGCGAGTGACATAGCCATTCAGGCCAAGGAAATCTTACTGACCAGGGATAGACTTAACAGTCTTTATGCCAAGCACACTGGGCAGAGCATTGAGAAGATTGAGAAATGCATGGAGAGGGACATGTTCATGTCG

Fln Alignment:

HIF1XHV02EHAXX___RRSLPNARIMVHQPSGGASGQASDIAIQAKEILLTRDRLNSLYAKHTGQSIEKIEKCMERDMFMS
A9NSF5________________RRSLPNARIMIHQPSGGASGQASDIAIQAKEILLTRDRLNSLYAKHTGQSIDKIEKCMERDMFMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain