SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149566

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene149566
ATGTGGCACCTCACTGAAAGGATGAAACCTCGTGGGGTGTTTGATGCTATTGTTATAGCTCATAATGGAAAATGTGCAAACAGCTTGCTTGCATCAGCTGGGATACCACTCATTGCAAGACAGATGAAGAGGCTGGAGTTAGAAGTTCTATCTGGGCCTTGCTTGCGGCATTTGATGATCCACTT

Ace file of the UniGene sp_v3.0_unigene149566

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gb\|AAF04895.1\|AC011437_10 unknown protein [Arabidopsis thaliana] gb\|AAK91359.1\| AT3g04650/F7O18_13 [Arabidopsis thaliana] gb\|AAO42761.1\| At3g04650/F7O18_13 [Arabidopsis tha	-	-	3.0e-16	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%

Source	Gene names
Sma3	At3g04650; F7O18.13; GSVIVT00002164001; LOC_Os12g40540; Os12g0597400; OsI_38983; OsJ_36748; PHYPADRAFT_118689; POPTRDRAFT_810462; RCOM_0484200; VITISV_000598;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Conserved hypothetical protein CHP00275, flavoprotein HI0933-like	IPR004792	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	FAD dependent oxidoreductase	IPR006076	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04650.1	FAD/NAD(P)-binding oxidoreductase family protein chr3:1262017-1264343 FORWARD LENGTH=486	2.0e-18	68%
RefSeq	Arabidopsis thaliana	NP_566235.1	FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]	3.0e-18	68%
RefSeq	Populus trichocarpa	XP_002328333.1	predicted protein [Populus trichocarpa]	7.0e-18	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C3T9

Fln msg: Separated hits, possible frame ERROR between 141 and 144, Distance to subject end: 2101 aas, your sequence is shorter than subject: 62 - 2691

Fln protein: MWHLTERMKPRGVFDAIVIAHNGKCANSLLASAGIPLIARQMKRLExxSSIWALLAAFDDPL

Protein Length: 63

Fln nts: ATGTGGCACCTCACTGAAAGGATGAAACCTCGTGGGGTGTTTGATGCTATTGTTATAGCTCATAATGGAAAATGTGCAAACAGCTTGCTTGCATCAGCTGGGATACCACTCATTGCAAGACAGATGAAGAGGCTGGAGTTxxxAAGTTCTATCTGGGCCTTGCTTGCGGCATTTGATGATCCACTT

Fln Alignment:

HIF1XHV02EU35X___MWHLTERMKPRGVFDAIVIAHNGKCANSLLASAGIPLIARQMKRLELxSSIWALLAAFDDPL
A5C3T9________________MWHLSENGKPHGQYDAIVIAHNGKCANHLLASSGLPLVARQMKKLELxSSIWALLAAFEDPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain