SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149469

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene149469
AGCAGAGGTTTGCAGGATGACGATCAGGTTGAAGAAGAACGAGAAGAAGAGAGAGCACGTGAGCGCAGGCGATGGGCGTATAAGCAAGCATAGGAAGCACCTGGGTGGTCGAGGTAATGCTGGGGGGTATGCATCACCACCATATTCTCTTTGACAAGTACCACCCCGGCTACTTCGGCAAGGTTGGTATGATGCATATCCACAAGCTCAGGAATCACTATCACTACCCCAT

Ace file of the UniGene sp_v3.0_unigene149469

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L27a [Petunia x hybrida]	-	-	2.0e-24	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	60S ribosomal protein L27a-2	-	-	3.328e-12	-

Source	Gene names
Sma3	At1g23290; At1g70600; F24J13.17; F26F24.13; F26F24_23; GSVIVT00009466001; GSVIVT00016000001; GSVIVT00020666001; LOC_Os03g29460; MICPUCDRAFT_26131; MICPUN_94088; OJ1003_H02.128; OJ1077_E05.13; OSJNBa0030J19.9; OSTLU_27402; OSTLU_27472; Os02g0175600; Os03g0

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L15, conserved site	IPR001196	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein chr1:26621168-26621608 REVERSE LENGTH=146	3.0e-26	77%
RefSeq	Arabidopsis thaliana	NP_177217.1	60S ribosomal protein L27a-3 [Arabidopsis thaliana]	3.0e-26	77%
RefSeq	Populus trichocarpa	XP_002322778.1	predicted protein [Populus trichocarpa]	3.0e-27	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWY0

Fln msg: Overlapping hits, possible frame ERROR between 127 and 123, Distance to subject end: 73 aas, your sequence is shorter than subject: 72 - 145

Fln protein: MTIRLKKNEKKREHVSAGDGRISKHRKHLGGRGNAxxxMHHHHILFDKYHPGYFGKVGMMHIHKLRNHYHYP

Protein Length: 73

Fln nts: AGCAGAGGTTTGCAGG_-_ATGACGATCAGGTTGAAGAAGAACGAGAAGAAGAGAGAGCACGTGAGCGCAGGCGATGGGCGTATAAGCAAGCATAGGAAGCACCTGGGTGGTCGAGGTAATGCTxxxxxxxxxATGCATCACCACCATATTCTCTTTGACAAGTACCACCCCGGCTACTTCGGCAAGGTTGGTATGATGCATATCCACAAGCTCAGGAATCACTATCACTACCCCAT

Fln Alignment:

HIF1XHV02D7WRR___MTIRLKKNEKKREHVSAGDGRISKHRKHLGGRGNAxxMHHHHILFDKYHPGYFGKVGMMHIHKLRNHYHYP
A9NWY0________________MTTRLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAxxMHHHRILFDKYHPGYFGKVGMRHFHKLRNHYHCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain