SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149434

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene149434
TTCTCATGATTCCAATCATCAACTAACATGCGTTGGAGCTCGTTGTTTTCGCCTCACATTTATTATAATGACAATTGTAACCTTGTTTGGCTTCTTAGTTTCTCTAACTCTTGTGCTCAGAACAAGGGAGTTCTATAGAGGGGATATTTATGCTAAATTCCGGCAGGTAGAAAAGTCCCACCTGGAAATTGAAGCAGAGGTTTATTCCGAAATCCCCAAATCATTGGGCGCGACTCGGCAAACATC

Ace file of the UniGene sp_v3.0_unigene149434

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AAC98454.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AAL14413.1\| At2g28120/F24D13.9 [Arabidopsis thaliana] gb\|AAL32615.1\| nodulin-like protein [Arabidopsis thaliana] gb\|AAM13326.1\| nodulin-like pro	-	-	4.0e-12	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	51%
Sma3	Chromosome chr13 scaffold_17, whole genome shotgun sequence	-	-	3.006e-09	-

Source	Gene names
Sma3	GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018125001; VITISV_011832;

Source	InterPros	Term	Type	Identity
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28120.1	Major facilitator superfamily protein chr2:11985934-11987667 FORWARD LENGTH=577	3.0e-16	57%
RefSeq	Arabidopsis thaliana	NP_180379.1	major facilitator protein [Arabidopsis thaliana]	4.0e-16	57%
RefSeq	Populus trichocarpa	XP_002331452.1	predicted protein [Populus trichocarpa]	9.0e-15	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6I781

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 81 - 246

Fln protein: SHDSNHQLTCVGARCFRLTFIIMTIVTLFGFLVSLTLVLRTREFYRGDIYAKFRQVEKSHLEIEAEVYSEIPKSLGATRQT

Protein Length: 82

Fln nts: TTCTCATGATTCCAATCATCAACTAACATGCGTTGGAGCTCGTTGTTTTCGCCTCACATTTATTATAATGACAATTGTAACCTTGTTTGGCTTCTTAGTTTCTCTAACTCTTGTGCTCAGAACAAGGGAGTTCTATAGAGGGGATATTTATGCTAAATTCCGGCAGGTAGAAAAGTCCCACCTGGAAATTGAAGCAGAGGTTTATTCCGAAATCCCCAAATCATTGGGCGCGACTCGGCAAACATC

Fln Alignment:

HIF1XHV02EBLWZ___LTCVGARCFRLTFIIMTIVTLFGFLVSLTLVLRTREFYRGDIYAKFRQVEKSHLEIEAEVYSEIPKSLGATR
F6I781________________LNCSGVECFKLAFIIITAVTFFGSLVSFVLVLRTREFYKSDIYNKFRPDEAEAVEMEMAVAGNVVSGSSAVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain