SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149401

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene149401
ATGTTAATGCATCACTGCATCTGCTGTTTCTGGCTCTGAGAATCGGCTCTCTTCTGTGTTCGCGAAGTACGTCGATACCACTATGGCGAGCCGAGATCATGCTGTCATGTTCCCTTATCCTGCTGAGGGTCACATTAAGCCCATGATGCAGCTTGCCAAAATCTTGTACGCTTGAGGCTTCTATATCACCTTCGTTAACACCGACTATGTTCAAGAGCGGTTGGCTAAGTCCGGATCGGTGTCCGTG

Ace file of the UniGene sp_v3.0_unigene149401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucuronosyltransferase, putative n=2 Tax=Ricinus communis RepID=B9SIN1_RICCO	-	-	2.0e-12	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	Gene names
Sma3	RCOM_0824220;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22360.1	AtUGT85A2, UGT85A2 UDP-glucosyl transferase 85A2 chr1:7895068-7897527 REVERSE LENGTH=481	4.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_001031078.1	UDP-glucosyl transferase 85A2 [Arabidopsis thaliana]	5.0e-14	60%
RefSeq	Populus trichocarpa	XP_002323756.1	predicted protein [Populus trichocarpa]	6.0e-16	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW4

Fln msg: Distance to subject end: 418 aas, your sequence is shorter than subject: 55 - 476

Fln protein: MASRDHAVMFPYPAEGHIKPMMQLAKILYA*GFYITFVNTDYVQERLAKSGSVSV

Protein Length: 56

Fln nts: ATGTTAATGCATCACTGCATCTGCTGTTTCTGGCTCTGAGAATCGGCTCTCTTCTGTGTTCGCGAAGTACGTCGATACCACT_-_ATGGCGAGCCGAGATCATGCTGTCATGTTCCCTTATCCTGCTGAGGGTCACATTAAGCCCATGATGCAGCTTGCCAAAATCTTGTACGCTTGAGGCTTCTATATCACCTTCGTTAACACCGACTATGTTCAAGAGCGGTTGGCTAAGTCCGGATCGGTGTCCGTG

Fln Alignment:

HIF1XHV02EB5LZ___SRDHAVMFPYPAEGHIKPMMQLAKILYA*GFYITFVNTDYVQERLAKSGSV
B8LQW4________________TRPHALMLPFPSQGHIQAMMQLSKLLYARGFYITFVNTEYIQERLEASGSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain