SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149377

Length: 307 nt

UniGene Fasta

>sp_v3.0_unigene149377
TGCTTCAATATCCTGGATGAGCAGGAAGCAGAAATCGGTTGCCTTAAGCACCGCCGAGGCTGAATACATAGCTGCTAGTACAGCCTCCTGTGAAGCTGTCTGGTTAAGGATGCTCTTCAGTGAGTTGTTTGGACATGTGTTGGATACCACCGTGATCCTCTGCTATAACCATAGTGGGATCTGATTATCAGAGAATCTCGTGTTTCATGATCGCTCCAAGCATATAGATATCAGGTATCACTTTATCCGGGATATGGTACAACGACGAGCAATAAGGCTCCATCACATTGGGACTGATGAGCAGGTC

Ace file of the UniGene sp_v3.0_unigene149377

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2R0F6_ORYSJ	-	-	2.0e-24	55%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	40%
Sma3	Retrotransposon protein, putative, unclassified	-	-	4.859e-07	-

Source	Gene names
Sma3	B1110B01.4; F11I4_21; LOC_Os03g05850; LOC_Os10g04074; LOC_Os10g26030; LOC_Os11g06960; LOC_Os11g42720; LOC_Os12g01790; LOC_Os12g05520; OSIGBa0097A15.7; OSIGBa0115A19.5; OSJNAb0072F04.11; OSJNBa0017O06.12; OSJNBa0022F16.23; OSJNBa0029L02.7; OSJNBa0061G20.13

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: STOP codon was not found. Distance to subject end: 25 aas, your sequence is shorter than subject: 102 - 542

Fln protein: ASISWMSRKQKSVALSTAEAEYIAASTASCEAVWLRMLFSELFGHVLDTTVILCYNHSGI*LSENLVFHDRSKHIDIRYHFIRDMVQRRAIRLHHIGTDEQV

Protein Length: 103

Fln nts: TGCTTCAATATCCTGGATGAGCAGGAAGCAGAAATCGGTTGCCTTAAGCACCGCCGAGGCTGAATACATAGCTGCTAGTACAGCCTCCTGTGAAGCTGTCTGGTTAAGGATGCTCTTCAGTGAGTTGTTTGGACATGTGTTGGATACCACCGTGATCCTCTGCTATAACCATAGTGGGATCTGATTATCAGAGAATCTCGTGTTTCATGATCGCTCCAAGCATATAGATATCAGGTATCACTTTATCCGGGATATGGTACAACGACGAGCAATAAGGCTCCATCACATTGGGACTGATGAGCAGGTC

Fln Alignment:

HIF1XHV02D9INK___SISWMSRKQKSVALSTAEAEYIAASTASCEAVWLRMLFSELFGHVLDTTVILCYNHSGI*LSENLVFHDRSKHIDI
Q9M5J7________________AISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGI-GLVQQVVRLDCEIQSAIFMAKNPAYDSKTNHIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain