SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149344

Length: 330 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene149344
GGAATTTGAAGAATTCTGTAAGAAGTGTAGTATATCACGGCAGAAGACTACTCCATATACACCTCAGCAAAATGGAGTTGCAGAAAGAATGAACAAGACGTTGATGGAAAGGGCAAGAAGCATGGTCAATGGTGTTGGGTTAGGACAGAAATTCTGGGCAAAGGCGGTGGATACTGCATGTTACCTGGTCAACAGGTCACCTTCATCAACGTTGGAGGATAAGACTCTACAAGAGGTATGGACTGGTAAGAAACTCTCTTTCACATCTAAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAAAGAACAAAGTTGGATA

Ace file of the UniGene sp_v3.0_unigene149344 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI	-	-	4.0e-28	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Copia-like retroelement pol polyprotein	-	-	4.9e-09	-

Source	Gene names
Sma3	AT4g21360; At2g13930; At2g15650; At2g15700; At2g19840; At2g21460; GSVIVT00019821001; LOC_Os03g27910; LOC_Os11g05840; LOC_Os11g15400; LYC_68t000004; OSIGBa0105O19.1; OSIGBa0127D24.3; OSJNAb0023M11.2; OSJNBa0033G05.13; OSJNBa0079H23.15; OSJNBa0093P23.9; OSJ

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Separated hits, possible frame ERROR between 253 and 255, Distance to subject end: 86 aas, your sequence is shorter than subject: 110 - 407

Fln protein: EFEEFCKKCSISRQKTTPYTPQQNGVAERMNKTLMERARSMVNGVGLGQKFWAKAVDTACYLVNRSPSSTLEDKTLQEVWTGKxxSLSHLRVFGCDAYVHVPKEKRTKLD

Protein Length: 111

Fln nts: GGAATTTGAAGAATTCTGTAAGAAGTGTAGTATATCACGGCAGAAGACTACTCCATATACACCTCAGCAAAATGGAGTTGCAGAAAGAATGAACAAGACGTTGATGGAAAGGGCAAGAAGCATGGTCAATGGTGTTGGGTTAGGACAGAAATTCTGGGCAAAGGCGGTGGATACTGCATGTTACCTGGTCAACAGGTCACCTTCATCAACGTTGGAGGATAAGACTCTACAAGAGGTATGGACTGGTAAGAAxxxCTCTCTTTCACATCTAAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAAAGAACAAAGTTGGATA

Fln Alignment:

HIF1XHV02ELMHS___EFEEFCKKCSISRQKTTPYTPQQNGVAERMNKTLMERARSMVNGVGLGQKFWAKAVDTACYLVNRSPSSTLEDKTLQEVWTGKKxSLSHLRVFGCDAYVHVPKEKRTKLD
B8LKX7________________EFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKxTVSHFKVFGCDVYVHIPDEKRKKLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain