SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149236

Length: 299 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene149236
TCAAATGACAGACTTAGGACACTTACACTATTTTCTCGGTCTTCAAGTCTTGCAAACCAAGGAGGGTATTTCCATTTCCCAGTCCAAGTATGCTTGTGATATTCTTCGTCATTTTCACATGCAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTAAAACTTTCAGTCACTTGTACTTCTCCTGAAGTTGATGCTACCTTATACCGTCAACTTGTCGGAAAACTTTTGTATCTGACCCATACTCGTCCTGACCTTTCCTTTGATGTTGGCCTTGTTGCTTGATTTATGCAAA

Ace file of the UniGene sp_v3.0_unigene149236 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE	-	-	2.0e-21	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	H0512B01.3; H0512B01.8; LOC_Os03g26290; LOC_Os10g12760; LOC_Os11g31870; LOC_Os11g44190; LOC_Os11g46010; LOC_Os12g09260; LOC_Os12g10900; LOC_Os12g40060; OJ000114_01.9; OJ1006F06.13; OSJNBa0007A06.5; OSJNBa0009K15.25; OSJNBa0013D02.15; OSJNBa0013O08.17; OSJ

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	adenylate kinase activity	GO:0004017	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Adenylate kinase	IPR000850	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Adenylate kinase, subfamily	IPR006259	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Adenylate kinase, active site lid domain	IPR007862	-	-
Sma3	GPI biosynthesis protein Pig-F	IPR009580	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00810.1	ORF240B DNA/RNA polymerases superfamily protein chrM:227709-228431 REVERSE LENGTH=240	7.0e-19	45%
RefSeq	Arabidopsis thaliana	NP_085537.1	hypothetical protein ArthMp070 (mitochondrion) [Arabidopsis thaliana]	9.0e-19	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 62 aas, your sequence is shorter than subject: 96 - 363

Fln protein: QMTDLGHLHYFLGLQVLQTKEGISISQSKYACDILRHFHMQDCKPAPSPFQSGVKLSVTCTSPEVDATLYRQLVGKLLYLTHTRPDLSFDVGLVA*

Protein Length: 97

Fln nts: TCAAATGACAGACTTAGGACACTTACACTATTTTCTCGGTCTTCAAGTCTTGCAAACCAAGGAGGGTATTTCCATTTCCCAGTCCAAGTATGCTTGTGATATTCTTCGTCATTTTCACATGCAAGACTGTAAGCCAGCTCCTTCTCCCTTTCAGTCTGGAGTAAAACTTTCAGTCACTTGTACTTCTCCTGAAGTTGATGCTACCTTATACCGTCAACTTGTCGGAAAACTTTTGTATCTGACCCATACTCGTCCTGACCTTTCCTTTGATGTTGGCCTTGTTGCTTGATTTATGCAAA

Fln Alignment:

HIF1XHV02D76ZU___QMTDLGHLHYFLGLQVLQTKEGISISQSKYACDILRHFHMQDCKPAPSPFQSGVKLSVTCTSPEVDATLYRQLVGKLLYLTHTRPDLSFDVGLVA*FM
B8LKV8________________EMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSREQNEMDFDSTIFRKLVGSLMYLTATRPDIMYGVSLISRFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain