SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149221

Length: 126 nt

UniGene Fasta

>sp_v3.0_unigene149221
TGATTCAGTCACTAAGTTGCACATTGACATGTCTGATGCTGTCAATGTTATAATGCATACAGCCGAGGTCAAGTTCTCAGATTTCCAACAAAAGCAAATAGAGAAATTGAGAGCAGAATACAGAAT

Ace file of the UniGene sp_v3.0_unigene149221

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor jumonji domain-containing protein n=2 Tax=Arabidopsis RepID=D7KN75_ARALL	-	-	3.0e-06	60%
FL-Next	tr=Putative uncharacterized protein Sb01g015210; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00023403001;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3		IPR013129	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5WTA4

Fln msg: Distance to subject end: 308 aas, your sequence is shorter than subject: 41 - 990

Fln protein: DSVTKLHIDMSDAVNVIMHTAEVKFSDFQQKQIEKLRAEYR

Protein Length: 42

Fln nts: TGATTCAGTCACTAAGTTGCACATTGACATGTCTGATGCTGTCAATGTTATAATGCATACAGCCGAGGTCAAGTTCTCAGATTTCCAACAAAAGCAAATAGAGAAATTGAGAGCAGAATACAGAAT

Fln Alignment:

HIF1XHV02DESP2___DSVTKLHIDMSDAVNVIMHTAEVKFSDFQQKQIEKLRAEYR
C5WTA4________________DSVTKLHCDMSDAVNILTHTTQVTYEGYQHKKIEKLRKKMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain