SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene149014

Length: 264 nt

UniGene Fasta

>sp_v3.0_unigene149014
CTGTTGGAGGACCTGCTAGGACAGGAGAGACCAAGTTCCAAAATTGGAGAACACACTTGCAGAGTTGTGGATTTCGACAAATATCAATGAGAGGGAATGCTTCTGTTCAGGCAGAGCTTTTACTGAACATGTTTTGCTGTGAAGGCTATTCACTTGTTGAGGAAGGAGGGATCCTCAAATTTGGGTGGAAGGACTTGTCACTTTACATTGCCTCTGCCTGGACGTCATGGACTTCATGACTGTGTGGTTCAATATGTATCCATC

Ace file of the UniGene sp_v3.0_unigene149014

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Scarecrow 2 n=1 Tax=Lupinus albus RepID=C9WBB7_LUPAL	-	-	2.0e-22	68%
FL-Next	tr=SCARECROW; Pinus sylvestris (Scots pine).	-	-	0.0	64%
Sma3	Protein SCARECROW	-	-	3.051e-17	-

Source	Gene names
Sma3	At3g54220; F24B22.180; GRAS1; GRAS2; GRAS3; GRAS4; GRAS5; GSVIVT00013690001; GSVIVT00028562001; GSVIVT00033608001; MtrDRAFT_AC155890g4v2; OsI_033718; OsI_036053; PHYPADRAFT_22273; POPTRDRAFT_551018; POPTRDRAFT_560240; POPTRDRAFT_589585; POPTRDRAFT_668277;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	asymmetric cell division	GO:0008356	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	radial pattern formation	GO:0009956	Biological Process	-
Sma3	maintenance of protein location in nucleus	GO:0051457	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-
Sma3	Flagellar basal body rod protein, conserved site	IPR019776	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54220.1	SCR, SGR1 GRAS family transcription factor chr3:20070550-20072625 FORWARD LENGTH=653	7.0e-27	62%
RefSeq	Arabidopsis thaliana	NP_190990.1	protein scarecrow [Arabidopsis thaliana]	8.0e-27	62%
RefSeq	Populus trichocarpa	XP_002323112.1	GRAS family transcription factor [Populus trichocarpa]	1.0e-24	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q0MRQ2

Fln msg: your sequence is shorter than subject: 79 - 842

Fln protein: VGGPARTGETKFQNWRTHLQSCGFRQISMRGNASVQAELLLNMFCCEGYSLVEEGGILKFGWKDLSLYIASAWTSWTS*

Protein Length: 80

Fln nts: CTGTTGGAGGACCTGCTAGGACAGGAGAGACCAAGTTCCAAAATTGGAGAACACACTTGCAGAGTTGTGGATTTCGACAAATATCAATGAGAGGGAATGCTTCTGTTCAGGCAGAGCTTTTACTGAACATGTTTTGCTGTGAAGGCTATTCACTTGTTGAGGAAGGAGGGATCCTCAAATTTGGGTGGAAGGACTTGTCACTTTACATTGCCTCTGCCTGGACGTCATGGACTTCATGA___CTGTGTGGTTCAATATGTATCCATC

Fln Alignment:

HLKU4M001AXHAK___VGGPARTGETKFQNWRTHLQSCGFRQISMRGNASVQAELLLNMFCCEGYSLVEEGGILKFGWKDLSLYIASAW
Q0MRQ2________________VGGPARTGEIKFDNWRDQLKQTGFKPISLAGNAATQATLLLGMFPCQGYTLMEENGTLKLGWKGLCLLTASAW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain