SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148951

Length: 300 nt

UniGene Fasta

>sp_v3.0_unigene148951
CGAATGCATCGCCTTCTTGGTAATAGGTGGTCCCTGATAGCCAAGAGACTGCCTGGGCGAACAGACAACAAAATCAAGAACCACTGGAACACTCATCTCAGCAAGAAGGTGCAAATGAGTGTATCTAAACGCAATACGCAGGTTCTCAAAAGAGAGTCAACTTTTCCGTCTCCTGTACAAAATCATATGTTCAAACCCAAACCGGTGAAAATCGTAAGACCAAACGTCTGGAAGGGTCATGGCAGTAATCATAGTTCGGATGAAGGTTCCTTCAAATTCCGTAATCTTCAAGAAACTACT

Ace file of the UniGene sp_v3.0_unigene148951

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB-like protein 2 n=2 Tax=Gossypium RepID=B6E2S8_GOSBA	-	-	1.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Glabrous 1A	-	-	1.909e-07	-

Source	Gene names
Sma3	At1g66380; At1g66390; At3g13540; At3g27920; At5g40330; At5g49330; GL1; GL1A; GSVIVT00002010001; GSVIVT00002700001; GSVIVT00008644001; GSVIVT00009522001; GSVIVT00016076001; GSVIVT00016466001; GSVIVT00016944001; GSVIVT00016947001; GSVIVT00020733001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cell fate specification	GO:0001708	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	-
Sma3	regulation of protein localization	GO:0032880	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-
Sma3	trichome patterning	GO:0048629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66390.1	ATMYB90, PAP2, MYB90 myb domain protein 90 chr1:24764052-24765400 FORWARD LENGTH=249	3.0e-18	56%
RefSeq	Arabidopsis thaliana	NP_176813.1	transcription factor MYB90 [Arabidopsis thaliana]	3.0e-18	56%
RefSeq	Populus trichocarpa	XP_002301694.1	predicted protein [Populus trichocarpa]	4.0e-18	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSF0

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 100 - 357

Fln protein: RMHRLLGNRWSLIAKRLPGRTDNKIKNHWNTHLSKKVQMSVSKRNTQVLKRESTFPSPVQNHMFKPKPVKIVRPNVWKGHGSNHSSDEGSFKFRNLQETT

Protein Length: 101

Fln nts: CGAATGCATCGCCTTCTTGGTAATAGGTGGTCCCTGATAGCCAAGAGACTGCCTGGGCGAACAGACAACAAAATCAAGAACCACTGGAACACTCATCTCAGCAAGAAGGTGCAAATGAGTGTATCTAAACGCAATACGCAGGTTCTCAAAAGAGAGTCAACTTTTCCGTCTCCTGTACAAAATCATATGTTCAAACCCAAACCGGTGAAAATCGTAAGACCAAACGTCTGGAAGGGTCATGGCAGTAATCATAGTTCGGATGAAGGTTCCTTCAAATTCCGTAATCTTCAAGAAACTACT

Fln Alignment:

HLKU4M001AQ5C6___RMHRLLGNRWSLIAKRLPGRTDNKIKNHWNTHLSKKVQMSVSKRNTQVLK--RESTFPSPVQNHMFKPKPVKI---------VRP-NVWKGHGSNHSSDEGSFKFRNLQETT
A9NSF0________________RLHRLLGNRWSLIAGRLPGRTDNEIKNYWNTCLSKKLLLSMTKSQSKVMKNVKSTSKSSPVQNRVFKTTPVKVTTAVRLSETIRPKGSINGYGCSNRSTDEAFKLCNAKETT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain