SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148784

Length: 320 nt

UniGene Fasta

>sp_v3.0_unigene148784
AGAGTGAAGCATGGGGGAACATTTACTGGAGAAATTCGTTCATTCAGTCGTGCTCATGTAGAAGGAAGATTTCTCGACTATGGATTTGGGCTCTGCGCTCTAACTACCATCTGAACCTCAAGCTTGCTCAGTCCTCAGTGGCAGTATCTCAATGCATCCTGAAGGTTTCCTAACTTACGTGCATGGTGGGATTCTTGCAGACGAAATGGGTTTAGGGAAAACAGTTGAGCTTCTTGCCTGCATCTTGGCACACCCTCGGAGATCAGATCAATCAGATTTTGTTCATGGCAAAGTGAATCCAGCGGAAAATGGGCACCGTT

Ace file of the UniGene sp_v3.0_unigene148784

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR	-	-	1.0e-09	72%
FL-Next	tr=Chromatin remodeling complex subunit; subsp. trichocarpa).	-	-	0.0	72%

Source	Gene names
Sma3	CHR938; OsI_27351; OsJ_25598; POPTRDRAFT_581093;

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Claudin, conserved site	IPR017974	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40770.1	" zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding chr2:17013535-17021315 REVERSE LENGTH=1664"	6.0e-11	63%
RefSeq	Arabidopsis thaliana	NP_181609.4	RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]	8.0e-11	63%
RefSeq	Populus trichocarpa	XP_002329202.1	chromatin remodeling complex subunit [Populus trichocarpa]	5.0e-13	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N1U4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 915 aas, your sequence is shorter than subject: 106 - 1320

Fln protein: E*SMGEHLLEKFVHSVVLM*KEDFSTMDLGSAL*LPSEPQACSVLSGSISMHPEGFLTYVHGGILADEMGLGKTVELLACILAHPRRSDQSDFVHGKVNPAENGHR

Protein Length: 107

Fln nts: AGAGTGAAGCATGGGGGAACATTTACTGGAGAAATTCGTTCATTCAGTCGTGCTCATGTAGAAGGAAGATTTCTCGACTATGGATTTGGGCTCTGCGCTCTAACTACCATCTGAACCTCAAGCTTGCTCAGTCCTCAGTGGCAGTATCTCAATGCATCCTGAAGGTTTCCTAACTTACGTGCATGGTGGGATTCTTGCAGACGAAATGGGTTTAGGGAAAACAGTTGAGCTTCTTGCCTGCATCTTGGCACACCCTCGGAGATCAGATCAATCAGATTTTGTTCATGGCAAAGTGAATCCAGCGGAAAATGGGCACCGTT

Fln Alignment:

HLKU4M001BWD4F___SGSISMHPEGFLTYVHGGILADEMGLGKTVELLACILAHPRRSDQSD
B9N1U4________________SGNVSFHPEFSPPYVSGGILADEMGLGKTVELLACILAH-RKSTSDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain