SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene148777

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene148777
CGTCGTGGTCGTGGACGACTCCATTGTCAGAGGCACCACGTCTTCCAAGATTGTGAGACTGATCAAGGACGCAGGCGCGACAGAAGTGCATGTGAGGATAGCCAGTCCTCCCATCATCGGCTCCTGCTATTACGGCGTGGACACGCCCAGCAAAGAGCAGCTGATATCTCACAACATGACCGTCGAGCAGACCCGGAAGTTCATAGGAGCCGACTCTCTTGCC

Ace file of the UniGene sp_v3.0_unigene148777

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amidophosphoribosyltransferase n=2 Tax=Selaginella moellendorffii RepID=D8R4A6_SELML	-	-	4.0e-27	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Amidophosphoribosyltransferase	-	-	1.62e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Amidophosphoribosyltransferase.	EC:2.4.2.14	-	2.326e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.326e-27	%
Sma3	Alanine, aspartate and glutamate metabolism	00250	2.326e-27	%
Sma3	Metabolic pathways	01100	2.326e-27	%
Sma3	Biosynthesis of secondary metabolites	01110	2.326e-27	%

Source	Gene names
Sma3	AT4g34740; AT4g38880; At2g16570; At4g34740; At4g34740/T4L20.320; At4g38880; GSVIVT00035979001; OJ1378_A04.3; OSJNBb0008G24.26; OSJNBb0048I21.14; Os01g0873100; Os05g0430800; OsI_04619; OsI_20066; OsJ_04255; OsJ_18638; P0491F11.21; PHYPADRAFT_174734; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid stroma	GO:0009532	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	amidophosphoribosyltransferase activity	GO:0004044	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	purine nucleotide biosynthetic process	GO:0006164	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	purine base biosynthetic process	GO:0009113	Biological Process	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Amidophosphoribosyl transferase	IPR005854	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16570.1	ATASE, ATASE1, ASE1 GLN phosphoribosyl pyrophosphate amidotransferase 1 chr2:7180424-7182124 REVERSE LENGTH=566	2.0e-32	75%
RefSeq	Arabidopsis thaliana	NP_179247.1	amidophosphoribosyltransferase [Arabidopsis thaliana]	3.0e-32	75%
RefSeq	Populus trichocarpa	XP_002313004.1	predicted protein, partial [Populus trichocarpa]	6.0e-34	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMG0

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 74 - 610

Fln protein: VVVVDDSIVRGTTSSKIVRLIKDAGATEVHVRIASPPIIGSCYYGVDTPSKEQLISHNMTVEQTRKFIGADSLA

Protein Length: 75

Fln nts: CGTCGTGGTCGTGGACGACTCCATTGTCAGAGGCACCACGTCTTCCAAGATTGTGAGACTGATCAAGGACGCAGGCGCGACAGAAGTGCATGTGAGGATAGCCAGTCCTCCCATCATCGGCTCCTGCTATTACGGCGTGGACACGCCCAGCAAAGAGCAGCTGATATCTCACAACATGACCGTCGAGCAGACCCGGAAGTTCATAGGAGCCGACTCTCTTGCC

Fln Alignment:

HLKU4M001AUVSQ___VVVVDDSIVRGTTSSKIVRLIKDAGATEVHVRIASPPIIGSCYYGVDTPSKEQLISHNMTVEQTRKFIGADSLA
B8LMG0________________VVVVDDSIVRGTTSSKIVRLIRDAGAREVHVRIASPPIIGSCYYGVDTPSREQLISHKMTVEQTRKFIGADSLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain